Gene : Seita.8G207000 S. italica v2.2
Defline:  (1 of 2) PTHR13675:SF1 - EXPRESSED PROTEIN Genomic Order:  2070
Name:  ? Seita.8G207000 Secondary Identifier:  ? PAC:32717421
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G207000 0.5kb upstream 0.5kb upstream 2278 true scaffold_8: 35524167-35526444 Setaria italica
Seita.8G207000 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 35525945-35526444 Setaria italica
Seita.8G207000 0.5kb downstream 0.5kb downstream 2278 true scaffold_8: 35523667-35525944 Setaria italica
Seita.8G207000 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 35523667-35524166 Setaria italica
Seita.8G207000 1.0kb upstream 1.0kb upstream 2778 true scaffold_8: 35524167-35526944 Setaria italica
Seita.8G207000 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 35525945-35526944 Setaria italica
Seita.8G207000 1.0kb downstream 1.0kb downstream 2778 true scaffold_8: 35523167-35525944 Setaria italica
Seita.8G207000 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 35523167-35524166 Setaria italica
Seita.8G207000 2.0kb upstream 2.0kb upstream 3778 true scaffold_8: 35524167-35527944 Setaria italica
Seita.8G207000 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 35525945-35527944 Setaria italica
Seita.8G207000 2.0kb downstream 2.0kb downstream 3778 true scaffold_8: 35522167-35525944 Setaria italica
Seita.8G207000 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 35522167-35524166 Setaria italica
Seita.8G207000 5.0kb upstream 5.0kb upstream 6778 true scaffold_8: 35524167-35530944 Setaria italica
Seita.8G207000 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 35525945-35530944 Setaria italica
Seita.8G207000 5.0kb downstream 5.0kb downstream 6778 true scaffold_8: 35519167-35525944 Setaria italica
Seita.8G207000 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 35519167-35524166 Setaria italica
Seita.8G207000 10.0kb upstream 10.0kb upstream 11778 true scaffold_8: 35524167-35535944 Setaria italica
Seita.8G207000 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 35525945-35535944 Setaria italica
Seita.8G207000 10.0kb downstream 10.0kb downstream 11778 true scaffold_8: 35514167-35525944 Setaria italica
Seita.8G207000 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 35514167-35524166 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122065296 5267 Panicoideae View MSA
124590098 5269 Grass View MSA
122045056 5273 Angiosperm View MSA
121351084 5274 Embryophyte View MSA
123425666 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.107        
cufflinks 7.621       High
cufflinks 3.576       Low
cufflinks 3.768        
cufflinks 3.995        
cufflinks 7.634       High
cufflinks 4.273        
cufflinks 5.901       High
cufflinks 4.13        
cufflinks 5.746        
cufflinks 4.338        
cufflinks 3.876        
cufflinks 4.45        
cufflinks 4.676        
cufflinks 4.826        
cufflinks 3.864        
cufflinks 5.112        
cufflinks 3.448       Low
cufflinks 3.996        
cufflinks 4.829        

0 Strain