Gene : Seita.8G208000 S. italica v2.2
Defline:  (1 of 1) PTHR11649//PTHR11649:SF60 - MSS1/TRME-RELATED GTP-BINDING PROTEIN Genomic Order:  2080
Name:  ? Seita.8G208000 Secondary Identifier:  ? PAC:32717656
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G208000 0.5kb upstream 0.5kb upstream 7276 true scaffold_8: 35597364-35604639 Setaria italica
Seita.8G208000 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 35597364-35597863 Setaria italica
Seita.8G208000 0.5kb downstream 0.5kb downstream 7276 true scaffold_8: 35597864-35605139 Setaria italica
Seita.8G208000 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 35604640-35605139 Setaria italica
Seita.8G208000 1.0kb upstream 1.0kb upstream 7776 true scaffold_8: 35596864-35604639 Setaria italica
Seita.8G208000 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 35596864-35597863 Setaria italica
Seita.8G208000 1.0kb downstream 1.0kb downstream 7776 true scaffold_8: 35597864-35605639 Setaria italica
Seita.8G208000 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 35604640-35605639 Setaria italica
Seita.8G208000 2.0kb upstream 2.0kb upstream 8776 true scaffold_8: 35595864-35604639 Setaria italica
Seita.8G208000 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 35595864-35597863 Setaria italica
Seita.8G208000 2.0kb downstream 2.0kb downstream 8776 true scaffold_8: 35597864-35606639 Setaria italica
Seita.8G208000 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 35604640-35606639 Setaria italica
Seita.8G208000 5.0kb upstream 5.0kb upstream 11776 true scaffold_8: 35592864-35604639 Setaria italica
Seita.8G208000 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 35592864-35597863 Setaria italica
Seita.8G208000 5.0kb downstream 5.0kb downstream 11776 true scaffold_8: 35597864-35609639 Setaria italica
Seita.8G208000 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 35604640-35609639 Setaria italica
Seita.8G208000 10.0kb upstream 10.0kb upstream 16776 true scaffold_8: 35587864-35604639 Setaria italica
Seita.8G208000 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 35587864-35597863 Setaria italica
Seita.8G208000 10.0kb downstream 10.0kb downstream 16776 true scaffold_8: 35597864-35614639 Setaria italica
Seita.8G208000 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 35604640-35614639 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187807 5267 Panicoideae View MSA
124581172 5269 Grass View MSA
122045813 5273 Angiosperm View MSA
121347341 5274 Embryophyte View MSA
123428429 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.484        
cufflinks 4.999        
cufflinks 12.699     High  
cufflinks 12.059     High  
cufflinks 16.188     High  
cufflinks 5.786        
cufflinks 11.765        
cufflinks 11.021        
cufflinks 25.855     High High
cufflinks 3.761        
cufflinks 7.042        
cufflinks 1.318       Low
cufflinks 1.696       Low
cufflinks 10.632        
cufflinks 1.129       Low
cufflinks 13.709     High  
cufflinks 1.166       Low
cufflinks 12.35     High  
cufflinks 6.242        
cufflinks 1.087       Low

0 Strain