Gene : Seita.8G204500 S. italica v2.2
Defline:  (1 of 2) PTHR23139//PTHR23139:SF62 - RNA-BINDING PROTEIN Genomic Order:  2045
Name:  ? Seita.8G204500 Secondary Identifier:  ? PAC:32716928
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G204500 0.5kb upstream 0.5kb upstream 5964 true scaffold_8: 35297260-35303223 Setaria italica
Seita.8G204500 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 35302724-35303223 Setaria italica
Seita.8G204500 0.5kb downstream 0.5kb downstream 5964 true scaffold_8: 35296760-35302723 Setaria italica
Seita.8G204500 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 35296760-35297259 Setaria italica
Seita.8G204500 1.0kb upstream 1.0kb upstream 6464 true scaffold_8: 35297260-35303723 Setaria italica
Seita.8G204500 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 35302724-35303723 Setaria italica
Seita.8G204500 1.0kb downstream 1.0kb downstream 6464 true scaffold_8: 35296260-35302723 Setaria italica
Seita.8G204500 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 35296260-35297259 Setaria italica
Seita.8G204500 2.0kb upstream 2.0kb upstream 7464 true scaffold_8: 35297260-35304723 Setaria italica
Seita.8G204500 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 35302724-35304723 Setaria italica
Seita.8G204500 2.0kb downstream 2.0kb downstream 7464 true scaffold_8: 35295260-35302723 Setaria italica
Seita.8G204500 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 35295260-35297259 Setaria italica
Seita.8G204500 5.0kb upstream 5.0kb upstream 10464 true scaffold_8: 35297260-35307723 Setaria italica
Seita.8G204500 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 35302724-35307723 Setaria italica
Seita.8G204500 5.0kb downstream 5.0kb downstream 10464 true scaffold_8: 35292260-35302723 Setaria italica
Seita.8G204500 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 35292260-35297259 Setaria italica
Seita.8G204500 10.0kb upstream 10.0kb upstream 15464 true scaffold_8: 35297260-35312723 Setaria italica
Seita.8G204500 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 35302724-35312723 Setaria italica
Seita.8G204500 10.0kb downstream 10.0kb downstream 15464 true scaffold_8: 35287260-35302723 Setaria italica
Seita.8G204500 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 35287260-35297259 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187114 5267 Panicoideae View MSA
124583459 5269 Grass View MSA
122050030 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349493 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.102     High High
cufflinks 14.619     High  
cufflinks 12.727     High  
cufflinks 10.448        
cufflinks 9.71       Low
cufflinks 13.835     High  
cufflinks 14.562     High  
cufflinks 14.598     High  
cufflinks 11.132        
cufflinks 11.476        
cufflinks 15.277     High  
cufflinks 13.747     High  
cufflinks 9.649       Low
cufflinks 11.936        
cufflinks 14.086     High  
cufflinks 21.152     High High
cufflinks 13.855        
cufflinks 28.571     High High
cufflinks 9.159       Low
cufflinks 13.425        

0 Strain