Gene : Seita.9G050100 S. italica v2.2
Genomic Order:  501 Name:  ? Seita.9G050100
Secondary Identifier:  ? PAC:32693007
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G050100 0.5kb upstream 0.5kb upstream 8063 true scaffold_9: 2869920-2877982 Setaria italica
Seita.9G050100 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 2869920-2870419 Setaria italica
Seita.9G050100 0.5kb downstream 0.5kb downstream 8063 true scaffold_9: 2870420-2878482 Setaria italica
Seita.9G050100 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 2877983-2878482 Setaria italica
Seita.9G050100 1.0kb upstream 1.0kb upstream 8563 true scaffold_9: 2869420-2877982 Setaria italica
Seita.9G050100 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 2869420-2870419 Setaria italica
Seita.9G050100 1.0kb downstream 1.0kb downstream 8563 true scaffold_9: 2870420-2878982 Setaria italica
Seita.9G050100 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 2877983-2878982 Setaria italica
Seita.9G050100 2.0kb upstream 2.0kb upstream 9563 true scaffold_9: 2868420-2877982 Setaria italica
Seita.9G050100 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 2868420-2870419 Setaria italica
Seita.9G050100 2.0kb downstream 2.0kb downstream 9563 true scaffold_9: 2870420-2879982 Setaria italica
Seita.9G050100 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 2877983-2879982 Setaria italica
Seita.9G050100 5.0kb upstream 5.0kb upstream 12563 true scaffold_9: 2865420-2877982 Setaria italica
Seita.9G050100 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 2865420-2870419 Setaria italica
Seita.9G050100 5.0kb downstream 5.0kb downstream 12563 true scaffold_9: 2870420-2882982 Setaria italica
Seita.9G050100 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 2877983-2882982 Setaria italica
Seita.9G050100 10.0kb upstream 10.0kb upstream 17563 true scaffold_9: 2860420-2877982 Setaria italica
Seita.9G050100 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 2860420-2870419 Setaria italica
Seita.9G050100 10.0kb downstream 10.0kb downstream 17563 true scaffold_9: 2870420-2887982 Setaria italica
Seita.9G050100 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 2877983-2887982 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026333 5273 Angiosperm View MSA
122182490 5267 Panicoideae View MSA
124582739 5269 Grass View MSA
121346710 5274 Embryophyte View MSA
123380433 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.225       High
cufflinks 5.92        
cufflinks 4.21        
cufflinks 4.577        
cufflinks 4.827        
cufflinks 6.523       High
cufflinks 4.709        
cufflinks 4.736        
cufflinks 4.254        
cufflinks 4.088       Low
cufflinks 5.06        
cufflinks 6.45       High
cufflinks 5.731        
cufflinks 3.547       Low
cufflinks 5.34        
cufflinks 5.557        
cufflinks 5.138        
cufflinks 7.772       High
cufflinks 4.18       Low
cufflinks 4.823        

0 Strain