Gene : Seita.9G049800 S. italica v2.2
Defline:  (1 of 2) PTHR34971:SF2 - PHOTOSYSTEM II REACTION CENTER PROTEIN Z Genomic Order:  498
Name:  ? Seita.9G049800 Secondary Identifier:  ? PAC:32686654
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G049800 0.5kb upstream 0.5kb upstream 683 true scaffold_9: 2859472-2860154 Setaria italica
Seita.9G049800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 2859655-2860154 Setaria italica
Seita.9G049800 0.5kb downstream 0.5kb downstream 683 true scaffold_9: 2858972-2859654 Setaria italica
Seita.9G049800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 2858972-2859471 Setaria italica
Seita.9G049800 1.0kb upstream 1.0kb upstream 1183 true scaffold_9: 2859472-2860654 Setaria italica
Seita.9G049800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 2859655-2860654 Setaria italica
Seita.9G049800 1.0kb downstream 1.0kb downstream 1183 true scaffold_9: 2858472-2859654 Setaria italica
Seita.9G049800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 2858472-2859471 Setaria italica
Seita.9G049800 2.0kb upstream 2.0kb upstream 2183 true scaffold_9: 2859472-2861654 Setaria italica
Seita.9G049800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 2859655-2861654 Setaria italica
Seita.9G049800 2.0kb downstream 2.0kb downstream 2183 true scaffold_9: 2857472-2859654 Setaria italica
Seita.9G049800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 2857472-2859471 Setaria italica
Seita.9G049800 5.0kb upstream 5.0kb upstream 5183 true scaffold_9: 2859472-2864654 Setaria italica
Seita.9G049800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 2859655-2864654 Setaria italica
Seita.9G049800 5.0kb downstream 5.0kb downstream 5183 true scaffold_9: 2854472-2859654 Setaria italica
Seita.9G049800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 2854472-2859471 Setaria italica
Seita.9G049800 10.0kb upstream 10.0kb upstream 10183 true scaffold_9: 2859472-2869654 Setaria italica
Seita.9G049800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 2859655-2869654 Setaria italica
Seita.9G049800 10.0kb downstream 10.0kb downstream 10183 true scaffold_9: 2849472-2859654 Setaria italica
Seita.9G049800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 2849472-2859471 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028507 5273 Angiosperm View MSA
122199253 5267 Panicoideae View MSA
124585159 5269 Grass View MSA
121349923 5274 Embryophyte View MSA
123381503 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.274        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.095       Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.458        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.522        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain