Gene : Seita.9G052100 S. italica v2.2
Defline:  (1 of 1) PTHR21737:SF4 - CACTIN Genomic Order:  521
Name:  ? Seita.9G052100 Secondary Identifier:  ? PAC:32687084
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G052100 0.5kb upstream 0.5kb upstream 6837 true scaffold_9: 2995665-3002501 Setaria italica
Seita.9G052100 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 3002002-3002501 Setaria italica
Seita.9G052100 0.5kb downstream 0.5kb downstream 6837 true scaffold_9: 2995165-3002001 Setaria italica
Seita.9G052100 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 2995165-2995664 Setaria italica
Seita.9G052100 1.0kb upstream 1.0kb upstream 7337 true scaffold_9: 2995665-3003001 Setaria italica
Seita.9G052100 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 3002002-3003001 Setaria italica
Seita.9G052100 1.0kb downstream 1.0kb downstream 7337 true scaffold_9: 2994665-3002001 Setaria italica
Seita.9G052100 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 2994665-2995664 Setaria italica
Seita.9G052100 2.0kb upstream 2.0kb upstream 8337 true scaffold_9: 2995665-3004001 Setaria italica
Seita.9G052100 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 3002002-3004001 Setaria italica
Seita.9G052100 2.0kb downstream 2.0kb downstream 8337 true scaffold_9: 2993665-3002001 Setaria italica
Seita.9G052100 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 2993665-2995664 Setaria italica
Seita.9G052100 5.0kb upstream 5.0kb upstream 11337 true scaffold_9: 2995665-3007001 Setaria italica
Seita.9G052100 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 3002002-3007001 Setaria italica
Seita.9G052100 5.0kb downstream 5.0kb downstream 11337 true scaffold_9: 2990665-3002001 Setaria italica
Seita.9G052100 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 2990665-2995664 Setaria italica
Seita.9G052100 10.0kb upstream 10.0kb upstream 16337 true scaffold_9: 2995665-3012001 Setaria italica
Seita.9G052100 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 3002002-3012001 Setaria italica
Seita.9G052100 10.0kb downstream 10.0kb downstream 16337 true scaffold_9: 2985665-3002001 Setaria italica
Seita.9G052100 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 2985665-2995664 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187960 5267 Panicoideae View MSA
124582087 5269 Grass View MSA
122043327 5273 Angiosperm View MSA
121346365 5274 Embryophyte View MSA
123428349 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.302        
cufflinks 9.751        
cufflinks 9.386        
cufflinks 10.052        
cufflinks 7.832        
cufflinks 9.081        
cufflinks 8.7        
cufflinks 7.143        
cufflinks 7.832        
cufflinks 3.488       Low
cufflinks 7.669        
cufflinks 10.444        
cufflinks 6.154       Low
cufflinks 6.667        
cufflinks 8.515        
cufflinks 9.033        
cufflinks 8.644        
cufflinks 13.729     High High
cufflinks 7.973        
cufflinks 7.683        

0 Strain