Gene : Seita.9G055600 S. italica v2.2
Defline:  (1 of 2) PTHR22952:SF90 - BASIC LEUCINE ZIPPER 63 Genomic Order:  556
Name:  ? Seita.9G055600 Secondary Identifier:  ? PAC:32692885
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G055600 0.5kb upstream 0.5kb upstream 4917 true scaffold_9: 3210030-3214946 Setaria italica
Seita.9G055600 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 3210030-3210529 Setaria italica
Seita.9G055600 0.5kb downstream 0.5kb downstream 4917 true scaffold_9: 3210530-3215446 Setaria italica
Seita.9G055600 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 3214947-3215446 Setaria italica
Seita.9G055600 1.0kb upstream 1.0kb upstream 5417 true scaffold_9: 3209530-3214946 Setaria italica
Seita.9G055600 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 3209530-3210529 Setaria italica
Seita.9G055600 1.0kb downstream 1.0kb downstream 5417 true scaffold_9: 3210530-3215946 Setaria italica
Seita.9G055600 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 3214947-3215946 Setaria italica
Seita.9G055600 2.0kb upstream 2.0kb upstream 6417 true scaffold_9: 3208530-3214946 Setaria italica
Seita.9G055600 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 3208530-3210529 Setaria italica
Seita.9G055600 2.0kb downstream 2.0kb downstream 6417 true scaffold_9: 3210530-3216946 Setaria italica
Seita.9G055600 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 3214947-3216946 Setaria italica
Seita.9G055600 5.0kb upstream 5.0kb upstream 9417 true scaffold_9: 3205530-3214946 Setaria italica
Seita.9G055600 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 3205530-3210529 Setaria italica
Seita.9G055600 5.0kb downstream 5.0kb downstream 9417 true scaffold_9: 3210530-3219946 Setaria italica
Seita.9G055600 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 3214947-3219946 Setaria italica
Seita.9G055600 10.0kb upstream 10.0kb upstream 14417 true scaffold_9: 3200530-3214946 Setaria italica
Seita.9G055600 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 3200530-3210529 Setaria italica
Seita.9G055600 10.0kb downstream 10.0kb downstream 14417 true scaffold_9: 3210530-3224946 Setaria italica
Seita.9G055600 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 3214947-3224946 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175031 5267 Panicoideae View MSA
124586675 5269 Grass View MSA
122051376 5273 Angiosperm View MSA
123428913 5275 Viridiplantae View MSA
121350237 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.653     High  
cufflinks 7.853       Low
cufflinks 20.659     High  
cufflinks 23.429     High High
cufflinks 15.833     High  
cufflinks 8.147       Low
cufflinks 8.551       Low
cufflinks 11.414        
cufflinks 10.333        
cufflinks 9.538        
cufflinks 11.006        
cufflinks 23.299     High High
cufflinks 13.588     High  
cufflinks 11.937        
cufflinks 9.877        
cufflinks 13.995     High  
cufflinks 13.575        
cufflinks 46.853     High High
cufflinks 15.878     High  
cufflinks 11.063        

0 Strain