Gene : Seita.9G056300 S. italica v2.2
Defline:  (1 of 1) PTHR11772//PTHR11772:SF20 - ASPARAGINE SYNTHETASE Genomic Order:  563
Name:  ? Seita.9G056300 Secondary Identifier:  ? PAC:32693774
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G056300 0.5kb upstream 0.5kb upstream 3107 true scaffold_9: 3274164-3277270 Setaria italica
Seita.9G056300 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 3276771-3277270 Setaria italica
Seita.9G056300 0.5kb downstream 0.5kb downstream 3107 true scaffold_9: 3273664-3276770 Setaria italica
Seita.9G056300 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 3273664-3274163 Setaria italica
Seita.9G056300 1.0kb upstream 1.0kb upstream 3607 true scaffold_9: 3274164-3277770 Setaria italica
Seita.9G056300 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 3276771-3277770 Setaria italica
Seita.9G056300 1.0kb downstream 1.0kb downstream 3607 true scaffold_9: 3273164-3276770 Setaria italica
Seita.9G056300 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 3273164-3274163 Setaria italica
Seita.9G056300 2.0kb upstream 2.0kb upstream 4607 true scaffold_9: 3274164-3278770 Setaria italica
Seita.9G056300 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 3276771-3278770 Setaria italica
Seita.9G056300 2.0kb downstream 2.0kb downstream 4607 true scaffold_9: 3272164-3276770 Setaria italica
Seita.9G056300 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 3272164-3274163 Setaria italica
Seita.9G056300 5.0kb upstream 5.0kb upstream 7607 true scaffold_9: 3274164-3281770 Setaria italica
Seita.9G056300 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 3276771-3281770 Setaria italica
Seita.9G056300 5.0kb downstream 5.0kb downstream 7607 true scaffold_9: 3269164-3276770 Setaria italica
Seita.9G056300 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 3269164-3274163 Setaria italica
Seita.9G056300 10.0kb upstream 10.0kb upstream 12607 true scaffold_9: 3274164-3286770 Setaria italica
Seita.9G056300 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 3276771-3286770 Setaria italica
Seita.9G056300 10.0kb downstream 10.0kb downstream 12607 true scaffold_9: 3264164-3276770 Setaria italica
Seita.9G056300 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 3264164-3274163 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181463 5267 Panicoideae View MSA
124570979 5269 Grass View MSA
122046778 5273 Angiosperm View MSA
121351327 5274 Embryophyte View MSA
123428842 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.371        
cufflinks 1.069       Low
cufflinks 14.279     High  
cufflinks 18.883     High High
cufflinks 13.506     High  
cufflinks 1.959       Low
cufflinks 8.167        
cufflinks 6.625        
cufflinks 5.673        
cufflinks 7.098        
cufflinks 5.213        
cufflinks 7.179        
cufflinks 8.761        
cufflinks 7.585        
cufflinks 2.166       Low
cufflinks 14.883     High  
cufflinks 6.784        
cufflinks 27.123     High High
cufflinks 15.966     High  
cufflinks 4.147        

0 Strain