Gene : Seita.9G058500 S. italica v2.2
Defline:  (1 of 138) PF07762 - Protein of unknown function (DUF1618) Genomic Order:  585
Name:  ? Seita.9G058500 Secondary Identifier:  ? PAC:32691448
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G058500 0.5kb upstream 0.5kb upstream 1329 true scaffold_9: 3365599-3366927 Setaria italica
Seita.9G058500 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 3365599-3366098 Setaria italica
Seita.9G058500 0.5kb downstream 0.5kb downstream 1329 true scaffold_9: 3366099-3367427 Setaria italica
Seita.9G058500 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 3366928-3367427 Setaria italica
Seita.9G058500 1.0kb upstream 1.0kb upstream 1829 true scaffold_9: 3365099-3366927 Setaria italica
Seita.9G058500 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 3365099-3366098 Setaria italica
Seita.9G058500 1.0kb downstream 1.0kb downstream 1829 true scaffold_9: 3366099-3367927 Setaria italica
Seita.9G058500 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 3366928-3367927 Setaria italica
Seita.9G058500 2.0kb upstream 2.0kb upstream 2829 true scaffold_9: 3364099-3366927 Setaria italica
Seita.9G058500 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 3364099-3366098 Setaria italica
Seita.9G058500 2.0kb downstream 2.0kb downstream 2829 true scaffold_9: 3366099-3368927 Setaria italica
Seita.9G058500 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 3366928-3368927 Setaria italica
Seita.9G058500 5.0kb upstream 5.0kb upstream 5829 true scaffold_9: 3361099-3366927 Setaria italica
Seita.9G058500 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 3361099-3366098 Setaria italica
Seita.9G058500 5.0kb downstream 5.0kb downstream 5829 true scaffold_9: 3366099-3371927 Setaria italica
Seita.9G058500 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 3366928-3371927 Setaria italica
Seita.9G058500 10.0kb upstream 10.0kb upstream 10829 true scaffold_9: 3356099-3366927 Setaria italica
Seita.9G058500 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 3356099-3366098 Setaria italica
Seita.9G058500 10.0kb downstream 10.0kb downstream 10829 true scaffold_9: 3366099-3376927 Setaria italica
Seita.9G058500 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 3366928-3376927 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121994770 5273 Angiosperm View MSA
122193733 5267 Panicoideae View MSA
124585583 5269 Grass View MSA
121264986 5274 Embryophyte View MSA
123303402 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.277        
cufflinks 0.288        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.033     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.323        
cufflinks 0.242        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.143        
cufflinks 2.664       High
cufflinks 0.813        
cufflinks 0.029     Low Low
cufflinks 0.404        
cufflinks 0.178        
cufflinks 1.157       High
cufflinks 0.322        
cufflinks 0.092     Low  
cufflinks 1.239       High

0 Strain