Gene : Seita.9G061400 S. italica v2.2
Defline:  (1 of 227) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Genomic Order:  614
Name:  ? Seita.9G061400 Secondary Identifier:  ? PAC:32692366
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G061400 0.5kb upstream 0.5kb upstream 6110 true scaffold_9: 3534052-3540161 Setaria italica
Seita.9G061400 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 3534052-3534551 Setaria italica
Seita.9G061400 0.5kb downstream 0.5kb downstream 6110 true scaffold_9: 3534552-3540661 Setaria italica
Seita.9G061400 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 3540162-3540661 Setaria italica
Seita.9G061400 1.0kb upstream 1.0kb upstream 6610 true scaffold_9: 3533552-3540161 Setaria italica
Seita.9G061400 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 3533552-3534551 Setaria italica
Seita.9G061400 1.0kb downstream 1.0kb downstream 6610 true scaffold_9: 3534552-3541161 Setaria italica
Seita.9G061400 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 3540162-3541161 Setaria italica
Seita.9G061400 2.0kb upstream 2.0kb upstream 7610 true scaffold_9: 3532552-3540161 Setaria italica
Seita.9G061400 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 3532552-3534551 Setaria italica
Seita.9G061400 2.0kb downstream 2.0kb downstream 7610 true scaffold_9: 3534552-3542161 Setaria italica
Seita.9G061400 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 3540162-3542161 Setaria italica
Seita.9G061400 5.0kb upstream 5.0kb upstream 10610 true scaffold_9: 3529552-3540161 Setaria italica
Seita.9G061400 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 3529552-3534551 Setaria italica
Seita.9G061400 5.0kb downstream 5.0kb downstream 10610 true scaffold_9: 3534552-3545161 Setaria italica
Seita.9G061400 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 3540162-3545161 Setaria italica
Seita.9G061400 10.0kb upstream 10.0kb upstream 15610 true scaffold_9: 3524552-3540161 Setaria italica
Seita.9G061400 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 3524552-3534551 Setaria italica
Seita.9G061400 10.0kb downstream 10.0kb downstream 15610 true scaffold_9: 3534552-3550161 Setaria italica
Seita.9G061400 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 3540162-3550161 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122193534 5267 Panicoideae View MSA
124572333 5269 Grass View MSA
122044868 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349952 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.872       High
cufflinks 3.548        
cufflinks 2.995        
cufflinks 2.679       Low
cufflinks 2.308       Low
cufflinks 3.845        
cufflinks 2.647       Low
cufflinks 3.81        
cufflinks 2.865        
cufflinks 4.117        
cufflinks 4.398        
cufflinks 3.79        
cufflinks 3.083        
cufflinks 3.941        
cufflinks 4.898       High
cufflinks 2.92        
cufflinks 4.43        
cufflinks 4.266        
cufflinks 2.565       Low
cufflinks 4.15        

0 Strain