Gene : Seita.9G060700 S. italica v2.2
Defline:  (1 of 1) PTHR11669:SF1 - REPLICATION FACTOR C SUBUNIT 3 Genomic Order:  607
Name:  ? Seita.9G060700 Secondary Identifier:  ? PAC:32692887
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G060700 0.5kb upstream 0.5kb upstream 4888 true scaffold_9: 3485109-3489996 Setaria italica
Seita.9G060700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 3489497-3489996 Setaria italica
Seita.9G060700 0.5kb downstream 0.5kb downstream 4888 true scaffold_9: 3484609-3489496 Setaria italica
Seita.9G060700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 3484609-3485108 Setaria italica
Seita.9G060700 1.0kb upstream 1.0kb upstream 5388 true scaffold_9: 3485109-3490496 Setaria italica
Seita.9G060700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 3489497-3490496 Setaria italica
Seita.9G060700 1.0kb downstream 1.0kb downstream 5388 true scaffold_9: 3484109-3489496 Setaria italica
Seita.9G060700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 3484109-3485108 Setaria italica
Seita.9G060700 2.0kb upstream 2.0kb upstream 6388 true scaffold_9: 3485109-3491496 Setaria italica
Seita.9G060700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 3489497-3491496 Setaria italica
Seita.9G060700 2.0kb downstream 2.0kb downstream 6388 true scaffold_9: 3483109-3489496 Setaria italica
Seita.9G060700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 3483109-3485108 Setaria italica
Seita.9G060700 5.0kb upstream 5.0kb upstream 9388 true scaffold_9: 3485109-3494496 Setaria italica
Seita.9G060700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 3489497-3494496 Setaria italica
Seita.9G060700 5.0kb downstream 5.0kb downstream 9388 true scaffold_9: 3480109-3489496 Setaria italica
Seita.9G060700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 3480109-3485108 Setaria italica
Seita.9G060700 10.0kb upstream 10.0kb upstream 14388 true scaffold_9: 3485109-3499496 Setaria italica
Seita.9G060700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 3489497-3499496 Setaria italica
Seita.9G060700 10.0kb downstream 10.0kb downstream 14388 true scaffold_9: 3475109-3489496 Setaria italica
Seita.9G060700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 3475109-3485108 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175030 5267 Panicoideae View MSA
124576425 5269 Grass View MSA
122043390 5273 Angiosperm View MSA
121345700 5274 Embryophyte View MSA
123424767 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.23        
cufflinks 3.845       High
cufflinks 2.611        
cufflinks 2.03        
cufflinks 1.351       Low
cufflinks 4.251       High
cufflinks 2.036        
cufflinks 2.403        
cufflinks 1.96        
cufflinks 2.06        
cufflinks 2.16        
cufflinks 2.337        
cufflinks 1.68        
cufflinks 2.82        
cufflinks 2.931        
cufflinks 1.794        
cufflinks 2.799        
cufflinks 1.187       Low
cufflinks 1.847        
cufflinks 2.465        

0 Strain