Gene : Seita.9G063900 S. italica v2.2
Defline:  (1 of 1) PTHR11390//PTHR11390:SF25 - PROKARYOTIC DNA TOPOISOMERASE Genomic Order:  639
Name:  ? Seita.9G063900 Secondary Identifier:  ? PAC:32688883
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G063900 0.5kb upstream 0.5kb upstream 5039 true scaffold_9: 3693206-3698244 Setaria italica
Seita.9G063900 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 3693206-3693705 Setaria italica
Seita.9G063900 0.5kb downstream 0.5kb downstream 5039 true scaffold_9: 3693706-3698744 Setaria italica
Seita.9G063900 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 3698245-3698744 Setaria italica
Seita.9G063900 1.0kb upstream 1.0kb upstream 5539 true scaffold_9: 3692706-3698244 Setaria italica
Seita.9G063900 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 3692706-3693705 Setaria italica
Seita.9G063900 1.0kb downstream 1.0kb downstream 5539 true scaffold_9: 3693706-3699244 Setaria italica
Seita.9G063900 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 3698245-3699244 Setaria italica
Seita.9G063900 2.0kb upstream 2.0kb upstream 6539 true scaffold_9: 3691706-3698244 Setaria italica
Seita.9G063900 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 3691706-3693705 Setaria italica
Seita.9G063900 2.0kb downstream 2.0kb downstream 6539 true scaffold_9: 3693706-3700244 Setaria italica
Seita.9G063900 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 3698245-3700244 Setaria italica
Seita.9G063900 5.0kb upstream 5.0kb upstream 9539 true scaffold_9: 3688706-3698244 Setaria italica
Seita.9G063900 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 3688706-3693705 Setaria italica
Seita.9G063900 5.0kb downstream 5.0kb downstream 9539 true scaffold_9: 3693706-3703244 Setaria italica
Seita.9G063900 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 3698245-3703244 Setaria italica
Seita.9G063900 10.0kb upstream 10.0kb upstream 14539 true scaffold_9: 3683706-3698244 Setaria italica
Seita.9G063900 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 3683706-3693705 Setaria italica
Seita.9G063900 10.0kb downstream 10.0kb downstream 14539 true scaffold_9: 3693706-3708244 Setaria italica
Seita.9G063900 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 3698245-3708244 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026221 5273 Angiosperm View MSA
122194996 5267 Panicoideae View MSA
124573840 5269 Grass View MSA
121296231 5274 Embryophyte View MSA
123425674 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.656       High
cufflinks 2.493       High
cufflinks 0.329       Low
cufflinks 0.473       Low
cufflinks 0.948        
cufflinks 2.699       High
cufflinks 1.657        
cufflinks 1.125        
cufflinks 0.901        
cufflinks 1.952        
cufflinks 1.972        
cufflinks 1.159        
cufflinks 1.273        
cufflinks 0.404       Low
cufflinks 1.167        
cufflinks 1.914        
cufflinks 1.328        
cufflinks 2.583       High
cufflinks 0.255       Low
cufflinks 1.289        

0 Strain