Gene : Seita.9G064600 S. italica v2.2
Defline:  (1 of 22) PF03634 - TCP family transcription factor (TCP) Genomic Order:  646
Name:  ? Seita.9G064600 Secondary Identifier:  ? PAC:32693738
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G064600 0.5kb upstream 0.5kb upstream 1715 true scaffold_9: 3743634-3745348 Setaria italica
Seita.9G064600 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 3744849-3745348 Setaria italica
Seita.9G064600 0.5kb downstream 0.5kb downstream 1715 true scaffold_9: 3743134-3744848 Setaria italica
Seita.9G064600 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 3743134-3743633 Setaria italica
Seita.9G064600 1.0kb upstream 1.0kb upstream 2215 true scaffold_9: 3743634-3745848 Setaria italica
Seita.9G064600 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 3744849-3745848 Setaria italica
Seita.9G064600 1.0kb downstream 1.0kb downstream 2215 true scaffold_9: 3742634-3744848 Setaria italica
Seita.9G064600 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 3742634-3743633 Setaria italica
Seita.9G064600 2.0kb upstream 2.0kb upstream 3215 true scaffold_9: 3743634-3746848 Setaria italica
Seita.9G064600 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 3744849-3746848 Setaria italica
Seita.9G064600 2.0kb downstream 2.0kb downstream 3215 true scaffold_9: 3741634-3744848 Setaria italica
Seita.9G064600 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 3741634-3743633 Setaria italica
Seita.9G064600 5.0kb upstream 5.0kb upstream 6215 true scaffold_9: 3743634-3749848 Setaria italica
Seita.9G064600 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 3744849-3749848 Setaria italica
Seita.9G064600 5.0kb downstream 5.0kb downstream 6215 true scaffold_9: 3738634-3744848 Setaria italica
Seita.9G064600 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 3738634-3743633 Setaria italica
Seita.9G064600 10.0kb upstream 10.0kb upstream 11215 true scaffold_9: 3743634-3754848 Setaria italica
Seita.9G064600 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 3744849-3754848 Setaria italica
Seita.9G064600 10.0kb downstream 10.0kb downstream 11215 true scaffold_9: 3733634-3744848 Setaria italica
Seita.9G064600 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 3733634-3743633 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189161 5267 Panicoideae View MSA
124587615 5269 Grass View MSA
122042527 5273 Angiosperm View MSA
121350950 5274 Embryophyte View MSA
123381946 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.596        
cufflinks 9.825       High
cufflinks 2.929        
cufflinks 4.217        
cufflinks 7.528        
cufflinks 12.925       High
cufflinks 7.288        
cufflinks 8.498       High
cufflinks 9.288       High
cufflinks 3.336        
cufflinks 4.088        
cufflinks 1.208       Low
cufflinks 1.594       Low
cufflinks 3.442        
cufflinks 0.978       Low
cufflinks 4.237        
cufflinks 1.344       Low
cufflinks 4.719        
cufflinks 2.047        
cufflinks 1.686       Low

0 Strain