Gene : Seita.9G071400 S. italica v2.2
Defline:  (1 of 3) 1.3.5.1 - Succinate dehydrogenase (quinone) / Succinic dehydrogenase Genomic Order:  714
Name:  ? Seita.9G071400 Secondary Identifier:  ? PAC:32687547
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-3781 Setaria italica pathologic  
Sitalica PWY-4302 Setaria italica pathologic  
Sitalica PWY-5464 Setaria italica pathologic  
Sitalica PWY-561 Setaria italica pathologic  
Sitalica PWY-5690 Setaria italica pathologic  
Sitalica PWY-7279 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G071400 0.5kb upstream 0.5kb upstream 6744 true scaffold_9: 4186124-4192867 Setaria italica
Seita.9G071400 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 4186124-4186623 Setaria italica
Seita.9G071400 0.5kb downstream 0.5kb downstream 6744 true scaffold_9: 4186624-4193367 Setaria italica
Seita.9G071400 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 4192868-4193367 Setaria italica
Seita.9G071400 1.0kb upstream 1.0kb upstream 7244 true scaffold_9: 4185624-4192867 Setaria italica
Seita.9G071400 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 4185624-4186623 Setaria italica
Seita.9G071400 1.0kb downstream 1.0kb downstream 7244 true scaffold_9: 4186624-4193867 Setaria italica
Seita.9G071400 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 4192868-4193867 Setaria italica
Seita.9G071400 2.0kb upstream 2.0kb upstream 8244 true scaffold_9: 4184624-4192867 Setaria italica
Seita.9G071400 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 4184624-4186623 Setaria italica
Seita.9G071400 2.0kb downstream 2.0kb downstream 8244 true scaffold_9: 4186624-4194867 Setaria italica
Seita.9G071400 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 4192868-4194867 Setaria italica
Seita.9G071400 5.0kb upstream 5.0kb upstream 11244 true scaffold_9: 4181624-4192867 Setaria italica
Seita.9G071400 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 4181624-4186623 Setaria italica
Seita.9G071400 5.0kb downstream 5.0kb downstream 11244 true scaffold_9: 4186624-4197867 Setaria italica
Seita.9G071400 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 4192868-4197867 Setaria italica
Seita.9G071400 10.0kb upstream 10.0kb upstream 16244 true scaffold_9: 4176624-4192867 Setaria italica
Seita.9G071400 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 4176624-4186623 Setaria italica
Seita.9G071400 10.0kb downstream 10.0kb downstream 16244 true scaffold_9: 4186624-4202867 Setaria italica
Seita.9G071400 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 4192868-4202867 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190568 5267 Panicoideae View MSA
124571712 5269 Grass View MSA
122043363 5273 Angiosperm View MSA
121346345 5274 Embryophyte View MSA
123424943 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.297        
cufflinks 9.331        
cufflinks 2.053       Low
cufflinks 1.655       Low
cufflinks 1.895       Low
cufflinks 9.552        
cufflinks 3.873        
cufflinks 8.687        
cufflinks 5.764        
cufflinks 5.693        
cufflinks 7.233        
cufflinks 12.382        
cufflinks 12.009        
cufflinks 1.92       Low
cufflinks 14.647     High High
cufflinks 3.558        
cufflinks 18.227     High High
cufflinks 2.401       Low
cufflinks 2.524        
cufflinks 18.836     High High

0 Strain