Gene : Seita.9G077700 S. italica v2.2
Defline:  (1 of 13) PF00651//PF03000 - BTB/POZ domain (BTB) // NPH3 family (NPH3) Genomic Order:  777
Name:  ? Seita.9G077700 Secondary Identifier:  ? PAC:32687833
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G077700 0.5kb upstream 0.5kb upstream 3197 true scaffold_9: 4575564-4578760 Setaria italica
Seita.9G077700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 4578261-4578760 Setaria italica
Seita.9G077700 0.5kb downstream 0.5kb downstream 3197 true scaffold_9: 4575064-4578260 Setaria italica
Seita.9G077700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 4575064-4575563 Setaria italica
Seita.9G077700 1.0kb upstream 1.0kb upstream 3697 true scaffold_9: 4575564-4579260 Setaria italica
Seita.9G077700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 4578261-4579260 Setaria italica
Seita.9G077700 1.0kb downstream 1.0kb downstream 3697 true scaffold_9: 4574564-4578260 Setaria italica
Seita.9G077700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 4574564-4575563 Setaria italica
Seita.9G077700 2.0kb upstream 2.0kb upstream 4697 true scaffold_9: 4575564-4580260 Setaria italica
Seita.9G077700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 4578261-4580260 Setaria italica
Seita.9G077700 2.0kb downstream 2.0kb downstream 4697 true scaffold_9: 4573564-4578260 Setaria italica
Seita.9G077700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 4573564-4575563 Setaria italica
Seita.9G077700 5.0kb upstream 5.0kb upstream 7697 true scaffold_9: 4575564-4583260 Setaria italica
Seita.9G077700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 4578261-4583260 Setaria italica
Seita.9G077700 5.0kb downstream 5.0kb downstream 7697 true scaffold_9: 4570564-4578260 Setaria italica
Seita.9G077700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 4570564-4575563 Setaria italica
Seita.9G077700 10.0kb upstream 10.0kb upstream 12697 true scaffold_9: 4575564-4588260 Setaria italica
Seita.9G077700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 4578261-4588260 Setaria italica
Seita.9G077700 10.0kb downstream 10.0kb downstream 12697 true scaffold_9: 4565564-4578260 Setaria italica
Seita.9G077700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 4565564-4575563 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184094 5267 Panicoideae View MSA
124585068 5269 Grass View MSA
122048903 5273 Angiosperm View MSA
121311163 5274 Embryophyte View MSA
123348497 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.177        
cufflinks 4.792        
cufflinks 0.15       Low
cufflinks 0.141       Low
cufflinks 0.283       Low
cufflinks 4.674        
cufflinks 4.653        
cufflinks 1.935        
cufflinks 3.272        
cufflinks 4.02        
cufflinks 6.123       High
cufflinks 2.048        
cufflinks 3.244        
cufflinks 0.243       Low
cufflinks 4.48        
cufflinks 0.773        
cufflinks 2.415        
cufflinks 0.343       Low
cufflinks 0.232       Low
cufflinks 5.069        

0 Strain