Gene : Seita.9G078400 S. italica v2.2
Defline:  (1 of 1) PTHR12869 - SMALL SEVEN TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN Genomic Order:  784
Name:  ? Seita.9G078400 Secondary Identifier:  ? PAC:32692992
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G078400 0.5kb upstream 0.5kb upstream 6078 true scaffold_9: 4612729-4618806 Setaria italica
Seita.9G078400 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 4612729-4613228 Setaria italica
Seita.9G078400 0.5kb downstream 0.5kb downstream 6078 true scaffold_9: 4613229-4619306 Setaria italica
Seita.9G078400 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 4618807-4619306 Setaria italica
Seita.9G078400 1.0kb upstream 1.0kb upstream 6578 true scaffold_9: 4612229-4618806 Setaria italica
Seita.9G078400 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 4612229-4613228 Setaria italica
Seita.9G078400 1.0kb downstream 1.0kb downstream 6578 true scaffold_9: 4613229-4619806 Setaria italica
Seita.9G078400 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 4618807-4619806 Setaria italica
Seita.9G078400 2.0kb upstream 2.0kb upstream 7578 true scaffold_9: 4611229-4618806 Setaria italica
Seita.9G078400 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 4611229-4613228 Setaria italica
Seita.9G078400 2.0kb downstream 2.0kb downstream 7578 true scaffold_9: 4613229-4620806 Setaria italica
Seita.9G078400 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 4618807-4620806 Setaria italica
Seita.9G078400 5.0kb upstream 5.0kb upstream 10578 true scaffold_9: 4608229-4618806 Setaria italica
Seita.9G078400 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 4608229-4613228 Setaria italica
Seita.9G078400 5.0kb downstream 5.0kb downstream 10578 true scaffold_9: 4613229-4623806 Setaria italica
Seita.9G078400 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 4618807-4623806 Setaria italica
Seita.9G078400 10.0kb upstream 10.0kb upstream 15578 true scaffold_9: 4603229-4618806 Setaria italica
Seita.9G078400 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 4603229-4613228 Setaria italica
Seita.9G078400 10.0kb downstream 10.0kb downstream 15578 true scaffold_9: 4613229-4628806 Setaria italica
Seita.9G078400 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 4618807-4628806 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184243 5267 Panicoideae View MSA
124583772 5269 Grass View MSA
122046816 5273 Angiosperm View MSA
121343820 5274 Embryophyte View MSA
123379923 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.267        
cufflinks 10.708        
cufflinks 4.755       Low
cufflinks 5.378       Low
cufflinks 5.849        
cufflinks 10.391        
cufflinks 6.865        
cufflinks 11.12        
cufflinks 9.54        
cufflinks 13.715       High
cufflinks 9.523        
cufflinks 10.165        
cufflinks 9.593        
cufflinks 5.34       Low
cufflinks 11.109        
cufflinks 4.669       Low
cufflinks 13.089       High
cufflinks 4.023       Low
cufflinks 6.206        
cufflinks 12.807       High

0 Strain