Gene : Seita.9G076200 S. italica v2.2
Defline:  (1 of 1) KOG1003 - Actin filament-coating protein tropomyosin Genomic Order:  762
Name:  ? Seita.9G076200 Secondary Identifier:  ? PAC:32691876
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G076200 0.5kb upstream 0.5kb upstream 3093 true scaffold_9: 4490881-4493973 Setaria italica
Seita.9G076200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 4493474-4493973 Setaria italica
Seita.9G076200 0.5kb downstream 0.5kb downstream 3093 true scaffold_9: 4490381-4493473 Setaria italica
Seita.9G076200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 4490381-4490880 Setaria italica
Seita.9G076200 1.0kb upstream 1.0kb upstream 3593 true scaffold_9: 4490881-4494473 Setaria italica
Seita.9G076200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 4493474-4494473 Setaria italica
Seita.9G076200 1.0kb downstream 1.0kb downstream 3593 true scaffold_9: 4489881-4493473 Setaria italica
Seita.9G076200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 4489881-4490880 Setaria italica
Seita.9G076200 2.0kb upstream 2.0kb upstream 4593 true scaffold_9: 4490881-4495473 Setaria italica
Seita.9G076200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 4493474-4495473 Setaria italica
Seita.9G076200 2.0kb downstream 2.0kb downstream 4593 true scaffold_9: 4488881-4493473 Setaria italica
Seita.9G076200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 4488881-4490880 Setaria italica
Seita.9G076200 5.0kb upstream 5.0kb upstream 7593 true scaffold_9: 4490881-4498473 Setaria italica
Seita.9G076200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 4493474-4498473 Setaria italica
Seita.9G076200 5.0kb downstream 5.0kb downstream 7593 true scaffold_9: 4485881-4493473 Setaria italica
Seita.9G076200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 4485881-4490880 Setaria italica
Seita.9G076200 10.0kb upstream 10.0kb upstream 12593 true scaffold_9: 4490881-4503473 Setaria italica
Seita.9G076200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 4493474-4503473 Setaria italica
Seita.9G076200 10.0kb downstream 10.0kb downstream 12593 true scaffold_9: 4480881-4493473 Setaria italica
Seita.9G076200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 4480881-4490880 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122055641 5267 Panicoideae Singleton cluster - no MSA
124355407 5269 Grass Singleton cluster - no MSA
122041630 5273 Angiosperm View MSA
121309873 5274 Embryophyte View MSA
123347512 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.195       High
cufflinks 0.649        
cufflinks 0.312        
cufflinks 0.412        
cufflinks 0.376        
cufflinks 0.775        
cufflinks 0.421        
cufflinks 0.987        
cufflinks 1.25       High
cufflinks 0.856        
cufflinks 1.909       High
cufflinks 0.149        
cufflinks 0.247        
cufflinks 0.17        
cufflinks 0.135       Low
cufflinks 0.83        
cufflinks 0.069     Low Low
cufflinks 0.426        
cufflinks 0.257        
cufflinks 0.059     Low Low

0 Strain