Gene : Seita.9G076300 S. italica v2.2
Defline:  (1 of 1) PTHR21569:SF2 - 30S RIBOSOMAL PROTEIN S9, CHLOROPLASTIC Genomic Order:  763
Name:  ? Seita.9G076300 Secondary Identifier:  ? PAC:32690552
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G076300 0.5kb upstream 0.5kb upstream 2786 true scaffold_9: 4495184-4497969 Setaria italica
Seita.9G076300 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 4495184-4495683 Setaria italica
Seita.9G076300 0.5kb downstream 0.5kb downstream 2786 true scaffold_9: 4495684-4498469 Setaria italica
Seita.9G076300 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 4497970-4498469 Setaria italica
Seita.9G076300 1.0kb upstream 1.0kb upstream 3286 true scaffold_9: 4494684-4497969 Setaria italica
Seita.9G076300 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 4494684-4495683 Setaria italica
Seita.9G076300 1.0kb downstream 1.0kb downstream 3286 true scaffold_9: 4495684-4498969 Setaria italica
Seita.9G076300 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 4497970-4498969 Setaria italica
Seita.9G076300 2.0kb upstream 2.0kb upstream 4286 true scaffold_9: 4493684-4497969 Setaria italica
Seita.9G076300 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 4493684-4495683 Setaria italica
Seita.9G076300 2.0kb downstream 2.0kb downstream 4286 true scaffold_9: 4495684-4499969 Setaria italica
Seita.9G076300 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 4497970-4499969 Setaria italica
Seita.9G076300 5.0kb upstream 5.0kb upstream 7286 true scaffold_9: 4490684-4497969 Setaria italica
Seita.9G076300 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 4490684-4495683 Setaria italica
Seita.9G076300 5.0kb downstream 5.0kb downstream 7286 true scaffold_9: 4495684-4502969 Setaria italica
Seita.9G076300 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 4497970-4502969 Setaria italica
Seita.9G076300 10.0kb upstream 10.0kb upstream 12286 true scaffold_9: 4485684-4497969 Setaria italica
Seita.9G076300 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 4485684-4495683 Setaria italica
Seita.9G076300 10.0kb downstream 10.0kb downstream 12286 true scaffold_9: 4495684-4507969 Setaria italica
Seita.9G076300 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 4497970-4507969 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189711 5267 Panicoideae View MSA
124588685 5269 Grass View MSA
122043582 5273 Angiosperm View MSA
121345989 5274 Embryophyte View MSA
123426879 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.07        
cufflinks 6.632        
cufflinks 12.478     High  
cufflinks 11.157     High  
cufflinks 32.463     High High
cufflinks 8.311        
cufflinks 29.056     High  
cufflinks 65.042     High High
cufflinks 62.429     High High
cufflinks 17.54     High  
cufflinks 6.971        
cufflinks 0.842       Low
cufflinks 1.534       Low
cufflinks 16.212     High  
cufflinks 0.495       Low
cufflinks 19.176     High  
cufflinks 0.762       Low
cufflinks 5.45        
cufflinks 8.96        
cufflinks 0.58       Low

0 Strain