Gene : Seita.9G081000 S. italica v2.2
Defline:  (1 of 10) PF04484 - Family of unknown function (DUF566) (DUF566) Genomic Order:  810
Name:  ? Seita.9G081000 Secondary Identifier:  ? PAC:32693322
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G081000 0.5kb upstream 0.5kb upstream 5307 true scaffold_9: 4813550-4818856 Setaria italica
Seita.9G081000 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 4818357-4818856 Setaria italica
Seita.9G081000 0.5kb downstream 0.5kb downstream 5307 true scaffold_9: 4813050-4818356 Setaria italica
Seita.9G081000 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 4813050-4813549 Setaria italica
Seita.9G081000 1.0kb upstream 1.0kb upstream 5807 true scaffold_9: 4813550-4819356 Setaria italica
Seita.9G081000 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 4818357-4819356 Setaria italica
Seita.9G081000 1.0kb downstream 1.0kb downstream 5807 true scaffold_9: 4812550-4818356 Setaria italica
Seita.9G081000 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 4812550-4813549 Setaria italica
Seita.9G081000 2.0kb upstream 2.0kb upstream 6807 true scaffold_9: 4813550-4820356 Setaria italica
Seita.9G081000 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 4818357-4820356 Setaria italica
Seita.9G081000 2.0kb downstream 2.0kb downstream 6807 true scaffold_9: 4811550-4818356 Setaria italica
Seita.9G081000 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 4811550-4813549 Setaria italica
Seita.9G081000 5.0kb upstream 5.0kb upstream 9807 true scaffold_9: 4813550-4823356 Setaria italica
Seita.9G081000 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 4818357-4823356 Setaria italica
Seita.9G081000 5.0kb downstream 5.0kb downstream 9807 true scaffold_9: 4808550-4818356 Setaria italica
Seita.9G081000 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 4808550-4813549 Setaria italica
Seita.9G081000 10.0kb upstream 10.0kb upstream 14807 true scaffold_9: 4813550-4828356 Setaria italica
Seita.9G081000 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 4818357-4828356 Setaria italica
Seita.9G081000 10.0kb downstream 10.0kb downstream 14807 true scaffold_9: 4803550-4818356 Setaria italica
Seita.9G081000 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 4803550-4813549 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181498 5267 Panicoideae View MSA
124577933 5269 Grass View MSA
122044458 5273 Angiosperm View MSA
121348675 5274 Embryophyte View MSA
123426167 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.927       High
cufflinks 7.266       High
cufflinks 0.253       Low
cufflinks 0.309       Low
cufflinks 0.71        
cufflinks 7.86       High
cufflinks 3.73        
cufflinks 3.376        
cufflinks 3.635        
cufflinks 4.308        
cufflinks 4.184        
cufflinks 2.079        
cufflinks 1.318        
cufflinks 0.379       Low
cufflinks 2.973        
cufflinks 2.567        
cufflinks 2.767        
cufflinks 2.643        
cufflinks 0.221       Low
cufflinks 2.55        

0 Strain