Gene : Seita.9G082000 S. italica v2.2
Defline:  (1 of 13) PF12854//PF13041 - PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  820
Name:  ? Seita.9G082000 Secondary Identifier:  ? PAC:32693131
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G082000 0.5kb upstream 0.5kb upstream 4665 true scaffold_9: 4878476-4883140 Setaria italica
Seita.9G082000 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 4882641-4883140 Setaria italica
Seita.9G082000 0.5kb downstream 0.5kb downstream 4665 true scaffold_9: 4877976-4882640 Setaria italica
Seita.9G082000 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 4877976-4878475 Setaria italica
Seita.9G082000 1.0kb upstream 1.0kb upstream 5165 true scaffold_9: 4878476-4883640 Setaria italica
Seita.9G082000 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 4882641-4883640 Setaria italica
Seita.9G082000 1.0kb downstream 1.0kb downstream 5165 true scaffold_9: 4877476-4882640 Setaria italica
Seita.9G082000 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 4877476-4878475 Setaria italica
Seita.9G082000 2.0kb upstream 2.0kb upstream 6165 true scaffold_9: 4878476-4884640 Setaria italica
Seita.9G082000 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 4882641-4884640 Setaria italica
Seita.9G082000 2.0kb downstream 2.0kb downstream 6165 true scaffold_9: 4876476-4882640 Setaria italica
Seita.9G082000 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 4876476-4878475 Setaria italica
Seita.9G082000 5.0kb upstream 5.0kb upstream 9165 true scaffold_9: 4878476-4887640 Setaria italica
Seita.9G082000 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 4882641-4887640 Setaria italica
Seita.9G082000 5.0kb downstream 5.0kb downstream 9165 true scaffold_9: 4873476-4882640 Setaria italica
Seita.9G082000 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 4873476-4878475 Setaria italica
Seita.9G082000 10.0kb upstream 10.0kb upstream 14165 true scaffold_9: 4878476-4892640 Setaria italica
Seita.9G082000 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 4882641-4892640 Setaria italica
Seita.9G082000 10.0kb downstream 10.0kb downstream 14165 true scaffold_9: 4868476-4882640 Setaria italica
Seita.9G082000 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 4868476-4878475 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176098 5267 Panicoideae View MSA
124577889 5269 Grass View MSA
122045173 5273 Angiosperm View MSA
121310410 5274 Embryophyte View MSA
123347900 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.619        
cufflinks 0.938       High
cufflinks 0.278        
cufflinks 0.165       Low
cufflinks 0.185       Low
cufflinks 0.832       High
cufflinks 0.435        
cufflinks 0.425        
cufflinks 0.566        
cufflinks 0.206     Low Low
cufflinks 0.552        
cufflinks 0.509        
cufflinks 0.269        
cufflinks 0.506        
cufflinks 0.475        
cufflinks 0.555        
cufflinks 0.666        
cufflinks 0.56        
cufflinks 0.104       Low
cufflinks 0.48        

0 Strain