Gene : Seita.9G089500 S. italica v2.2
Defline:  (1 of 1) PTHR10848//PTHR10848:SF3 - MEIOTIC RECOMBINATION PROTEIN SPO11 Genomic Order:  895
Name:  ? Seita.9G089500 Secondary Identifier:  ? PAC:32691639
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G089500 0.5kb upstream 0.5kb upstream 5068 true scaffold_9: 5397988-5403055 Setaria italica
Seita.9G089500 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 5402556-5403055 Setaria italica
Seita.9G089500 0.5kb downstream 0.5kb downstream 5068 true scaffold_9: 5397488-5402555 Setaria italica
Seita.9G089500 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 5397488-5397987 Setaria italica
Seita.9G089500 1.0kb upstream 1.0kb upstream 5568 true scaffold_9: 5397988-5403555 Setaria italica
Seita.9G089500 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 5402556-5403555 Setaria italica
Seita.9G089500 1.0kb downstream 1.0kb downstream 5568 true scaffold_9: 5396988-5402555 Setaria italica
Seita.9G089500 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 5396988-5397987 Setaria italica
Seita.9G089500 2.0kb upstream 2.0kb upstream 6568 true scaffold_9: 5397988-5404555 Setaria italica
Seita.9G089500 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 5402556-5404555 Setaria italica
Seita.9G089500 2.0kb downstream 2.0kb downstream 6568 true scaffold_9: 5395988-5402555 Setaria italica
Seita.9G089500 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 5395988-5397987 Setaria italica
Seita.9G089500 5.0kb upstream 5.0kb upstream 9568 true scaffold_9: 5397988-5407555 Setaria italica
Seita.9G089500 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 5402556-5407555 Setaria italica
Seita.9G089500 5.0kb downstream 5.0kb downstream 9568 true scaffold_9: 5392988-5402555 Setaria italica
Seita.9G089500 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 5392988-5397987 Setaria italica
Seita.9G089500 10.0kb upstream 10.0kb upstream 14568 true scaffold_9: 5397988-5412555 Setaria italica
Seita.9G089500 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 5402556-5412555 Setaria italica
Seita.9G089500 10.0kb downstream 10.0kb downstream 14568 true scaffold_9: 5387988-5402555 Setaria italica
Seita.9G089500 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 5387988-5397987 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175842 5267 Panicoideae View MSA
124580399 5269 Grass View MSA
122045880 5273 Angiosperm View MSA
121348033 5274 Embryophyte View MSA
123427912 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.818        
cufflinks 2.977       High
cufflinks 0.356       Low
cufflinks 0.881        
cufflinks 1.429        
cufflinks 3.671       High
cufflinks 1.371        
cufflinks 2.59       High
cufflinks 1.925        
cufflinks 2.46        
cufflinks 1.351        
cufflinks 1.018        
cufflinks 0.935        
cufflinks 0.176       Low
cufflinks 0.999        
cufflinks 1.114        
cufflinks 1.217        
cufflinks 0.968        
cufflinks 0.233       Low
cufflinks 1.052        

0 Strain