Gene : Seita.9G006200 S. italica v2.2
Defline:  (1 of 1) PTHR11953:SF1 - EXOSOME COMPLEX COMPONENT RRP46 Genomic Order:  62
Name:  ? Seita.9G006200 Secondary Identifier:  ? PAC:32690106
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G006200 0.5kb upstream 0.5kb upstream 3250 true scaffold_9: 357291-360540 Setaria italica
Seita.9G006200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 357291-357790 Setaria italica
Seita.9G006200 0.5kb downstream 0.5kb downstream 3250 true scaffold_9: 357791-361040 Setaria italica
Seita.9G006200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 360541-361040 Setaria italica
Seita.9G006200 1.0kb upstream 1.0kb upstream 3750 true scaffold_9: 356791-360540 Setaria italica
Seita.9G006200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 356791-357790 Setaria italica
Seita.9G006200 1.0kb downstream 1.0kb downstream 3750 true scaffold_9: 357791-361540 Setaria italica
Seita.9G006200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 360541-361540 Setaria italica
Seita.9G006200 2.0kb upstream 2.0kb upstream 4750 true scaffold_9: 355791-360540 Setaria italica
Seita.9G006200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 355791-357790 Setaria italica
Seita.9G006200 2.0kb downstream 2.0kb downstream 4750 true scaffold_9: 357791-362540 Setaria italica
Seita.9G006200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 360541-362540 Setaria italica
Seita.9G006200 5.0kb upstream 5.0kb upstream 7750 true scaffold_9: 352791-360540 Setaria italica
Seita.9G006200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 352791-357790 Setaria italica
Seita.9G006200 5.0kb downstream 5.0kb downstream 7750 true scaffold_9: 357791-365540 Setaria italica
Seita.9G006200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 360541-365540 Setaria italica
Seita.9G006200 10.0kb upstream 10.0kb upstream 12750 true scaffold_9: 347791-360540 Setaria italica
Seita.9G006200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 347791-357790 Setaria italica
Seita.9G006200 10.0kb downstream 10.0kb downstream 12750 true scaffold_9: 357791-370540 Setaria italica
Seita.9G006200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 360541-370540 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177727 5267 Panicoideae View MSA
124571639 5269 Grass View MSA
122042132 5273 Angiosperm View MSA
121346708 5274 Embryophyte View MSA
123426253 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.928        
cufflinks 6.518       High
cufflinks 2.122        
cufflinks 0.86       Low
cufflinks 1.097       Low
cufflinks 7.708       High
cufflinks 2.048        
cufflinks 3.902        
cufflinks 3.754        
cufflinks 3.085        
cufflinks 3.516        
cufflinks 3.85        
cufflinks 2.613        
cufflinks 4.362        
cufflinks 4.357        
cufflinks 2.333        
cufflinks 6.081       High
cufflinks 2.301        
cufflinks 1.205       Low
cufflinks 4.726        

0 Strain