Gene : Seita.9G004600 S. italica v2.2
Defline:  (1 of 1) PTHR33231:SF1 - 30S RIBOSOMAL PROTEIN-RELATED Genomic Order:  46
Name:  ? Seita.9G004600 Secondary Identifier:  ? PAC:32687474
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G004600 0.5kb upstream 0.5kb upstream 2147 true scaffold_9: 281198-283344 Setaria italica
Seita.9G004600 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 282845-283344 Setaria italica
Seita.9G004600 0.5kb downstream 0.5kb downstream 2147 true scaffold_9: 280698-282844 Setaria italica
Seita.9G004600 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 280698-281197 Setaria italica
Seita.9G004600 1.0kb upstream 1.0kb upstream 2647 true scaffold_9: 281198-283844 Setaria italica
Seita.9G004600 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 282845-283844 Setaria italica
Seita.9G004600 1.0kb downstream 1.0kb downstream 2647 true scaffold_9: 280198-282844 Setaria italica
Seita.9G004600 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 280198-281197 Setaria italica
Seita.9G004600 2.0kb upstream 2.0kb upstream 3647 true scaffold_9: 281198-284844 Setaria italica
Seita.9G004600 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 282845-284844 Setaria italica
Seita.9G004600 2.0kb downstream 2.0kb downstream 3647 true scaffold_9: 279198-282844 Setaria italica
Seita.9G004600 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 279198-281197 Setaria italica
Seita.9G004600 5.0kb upstream 5.0kb upstream 6647 true scaffold_9: 281198-287844 Setaria italica
Seita.9G004600 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 282845-287844 Setaria italica
Seita.9G004600 5.0kb downstream 5.0kb downstream 6647 true scaffold_9: 276198-282844 Setaria italica
Seita.9G004600 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 276198-281197 Setaria italica
Seita.9G004600 10.0kb upstream 10.0kb upstream 11647 true scaffold_9: 281198-292844 Setaria italica
Seita.9G004600 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 282845-292844 Setaria italica
Seita.9G004600 10.0kb downstream 10.0kb downstream 11647 true scaffold_9: 271198-282844 Setaria italica
Seita.9G004600 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 271198-281197 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181548 5267 Panicoideae View MSA
124571375 5269 Grass View MSA
122044034 5273 Angiosperm View MSA
121345807 5274 Embryophyte View MSA
123423894 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.33        
cufflinks 15.938     High  
cufflinks 109.789     High High
cufflinks 168.937     High High
cufflinks 124.449     High High
cufflinks 19.727     High  
cufflinks 44.577     High  
cufflinks 47.338     High  
cufflinks 55.727     High  
cufflinks 17.551     High  
cufflinks 11.128        
cufflinks 1.109       Low
cufflinks 2.309       Low
cufflinks 103.834     High High
cufflinks 1.165       Low
cufflinks 42.389     High  
cufflinks 1.461       Low
cufflinks 16.042     High  
cufflinks 37.247     High  
cufflinks 1.3       Low

0 Strain