Gene : Seita.9G008800 S. italica v2.2
Defline:  (1 of 7) PF07899 - Frigida-like protein (Frigida) Genomic Order:  88
Name:  ? Seita.9G008800 Secondary Identifier:  ? PAC:32688838
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G008800 0.5kb upstream 0.5kb upstream 2203 true scaffold_9: 464531-466733 Setaria italica
Seita.9G008800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 466234-466733 Setaria italica
Seita.9G008800 0.5kb downstream 0.5kb downstream 2203 true scaffold_9: 464031-466233 Setaria italica
Seita.9G008800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 464031-464530 Setaria italica
Seita.9G008800 1.0kb upstream 1.0kb upstream 2703 true scaffold_9: 464531-467233 Setaria italica
Seita.9G008800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 466234-467233 Setaria italica
Seita.9G008800 1.0kb downstream 1.0kb downstream 2703 true scaffold_9: 463531-466233 Setaria italica
Seita.9G008800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 463531-464530 Setaria italica
Seita.9G008800 2.0kb upstream 2.0kb upstream 3703 true scaffold_9: 464531-468233 Setaria italica
Seita.9G008800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 466234-468233 Setaria italica
Seita.9G008800 2.0kb downstream 2.0kb downstream 3703 true scaffold_9: 462531-466233 Setaria italica
Seita.9G008800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 462531-464530 Setaria italica
Seita.9G008800 5.0kb upstream 5.0kb upstream 6703 true scaffold_9: 464531-471233 Setaria italica
Seita.9G008800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 466234-471233 Setaria italica
Seita.9G008800 5.0kb downstream 5.0kb downstream 6703 true scaffold_9: 459531-466233 Setaria italica
Seita.9G008800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 459531-464530 Setaria italica
Seita.9G008800 10.0kb upstream 10.0kb upstream 11703 true scaffold_9: 464531-476233 Setaria italica
Seita.9G008800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 466234-476233 Setaria italica
Seita.9G008800 10.0kb downstream 10.0kb downstream 11703 true scaffold_9: 454531-466233 Setaria italica
Seita.9G008800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 454531-464530 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176182 5267 Panicoideae View MSA
124586684 5269 Grass View MSA
122043307 5273 Angiosperm View MSA
121310105 5274 Embryophyte View MSA
123347687 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.274       High
cufflinks 0.215       High
cufflinks 0.011     Low Low
cufflinks 0.016     Low  
cufflinks 0.023     Low  
cufflinks 0.211       High
cufflinks 0.182        
cufflinks 0.007     Low Low
cufflinks 0.012     Low Low
cufflinks 0.049     Low  
cufflinks 0.158        
cufflinks 0.01     Low Low
cufflinks 0.02     Low  
cufflinks 0.028     Low  
cufflinks 0.058     Low  
cufflinks 0.35       High
cufflinks 0.01     Low Low
cufflinks 0.281       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.068     Low  

0 Strain