Gene : Seita.9G010100 S. italica v2.2
Defline:  (1 of 2) PTHR36716:SF2 - F3H9.20 PROTEIN Genomic Order:  101
Name:  ? Seita.9G010100 Secondary Identifier:  ? PAC:32688804
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G010100 0.5kb upstream 0.5kb upstream 2430 true scaffold_9: 511967-514396 Setaria italica
Seita.9G010100 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 511967-512466 Setaria italica
Seita.9G010100 0.5kb downstream 0.5kb downstream 2430 true scaffold_9: 512467-514896 Setaria italica
Seita.9G010100 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 514397-514896 Setaria italica
Seita.9G010100 1.0kb upstream 1.0kb upstream 2930 true scaffold_9: 511467-514396 Setaria italica
Seita.9G010100 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 511467-512466 Setaria italica
Seita.9G010100 1.0kb downstream 1.0kb downstream 2930 true scaffold_9: 512467-515396 Setaria italica
Seita.9G010100 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 514397-515396 Setaria italica
Seita.9G010100 2.0kb upstream 2.0kb upstream 3930 true scaffold_9: 510467-514396 Setaria italica
Seita.9G010100 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 510467-512466 Setaria italica
Seita.9G010100 2.0kb downstream 2.0kb downstream 3930 true scaffold_9: 512467-516396 Setaria italica
Seita.9G010100 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 514397-516396 Setaria italica
Seita.9G010100 5.0kb upstream 5.0kb upstream 6930 true scaffold_9: 507467-514396 Setaria italica
Seita.9G010100 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 507467-512466 Setaria italica
Seita.9G010100 5.0kb downstream 5.0kb downstream 6930 true scaffold_9: 512467-519396 Setaria italica
Seita.9G010100 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 514397-519396 Setaria italica
Seita.9G010100 10.0kb upstream 10.0kb upstream 11930 true scaffold_9: 502467-514396 Setaria italica
Seita.9G010100 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 502467-512466 Setaria italica
Seita.9G010100 10.0kb downstream 10.0kb downstream 11930 true scaffold_9: 512467-524396 Setaria italica
Seita.9G010100 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 514397-524396 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189517 5267 Panicoideae View MSA
124577235 5269 Grass View MSA
122042294 5273 Angiosperm View MSA
121344555 5274 Embryophyte View MSA
123424040 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.522        
cufflinks 17.559     High  
cufflinks 72.81     High High
cufflinks 65.363     High High
cufflinks 63.123     High High
cufflinks 17.72     High  
cufflinks 25.415     High  
cufflinks 61.362     High High
cufflinks 35.334     High  
cufflinks 6.869        
cufflinks 4.726        
cufflinks 2.954       Low
cufflinks 3.37       Low
cufflinks 91.118     High High
cufflinks 2.787       Low
cufflinks 28.954     High  
cufflinks 3.523       Low
cufflinks 7.414        
cufflinks 67.348     High High
cufflinks 3.023       Low

0 Strain