Gene : Seita.9G012300 S. italica v2.2
Defline:  (1 of 2) PTHR21650 - MEMBRALIN/KINETOCHORE PROTEIN NUF2 Genomic Order:  123
Name:  ? Seita.9G012300 Secondary Identifier:  ? PAC:32690649
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G012300 0.5kb upstream 0.5kb upstream 5120 true scaffold_9: 657508-662627 Setaria italica
Seita.9G012300 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 662128-662627 Setaria italica
Seita.9G012300 0.5kb downstream 0.5kb downstream 5120 true scaffold_9: 657008-662127 Setaria italica
Seita.9G012300 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 657008-657507 Setaria italica
Seita.9G012300 1.0kb upstream 1.0kb upstream 5620 true scaffold_9: 657508-663127 Setaria italica
Seita.9G012300 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 662128-663127 Setaria italica
Seita.9G012300 1.0kb downstream 1.0kb downstream 5620 true scaffold_9: 656508-662127 Setaria italica
Seita.9G012300 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 656508-657507 Setaria italica
Seita.9G012300 2.0kb upstream 2.0kb upstream 6620 true scaffold_9: 657508-664127 Setaria italica
Seita.9G012300 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 662128-664127 Setaria italica
Seita.9G012300 2.0kb downstream 2.0kb downstream 6620 true scaffold_9: 655508-662127 Setaria italica
Seita.9G012300 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 655508-657507 Setaria italica
Seita.9G012300 5.0kb upstream 5.0kb upstream 9620 true scaffold_9: 657508-667127 Setaria italica
Seita.9G012300 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 662128-667127 Setaria italica
Seita.9G012300 5.0kb downstream 5.0kb downstream 9620 true scaffold_9: 652508-662127 Setaria italica
Seita.9G012300 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 652508-657507 Setaria italica
Seita.9G012300 10.0kb upstream 10.0kb upstream 14620 true scaffold_9: 657508-672127 Setaria italica
Seita.9G012300 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 662128-672127 Setaria italica
Seita.9G012300 10.0kb downstream 10.0kb downstream 14620 true scaffold_9: 647508-662127 Setaria italica
Seita.9G012300 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 647508-657507 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191604 5267 Panicoideae View MSA
124574927 5269 Grass View MSA
122050952 5273 Angiosperm View MSA
121351685 5274 Embryophyte View MSA
123425820 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.178        
cufflinks 3.071        
cufflinks 0.292       Low
cufflinks 0.162       Low
cufflinks 0.183       Low
cufflinks 3.371        
cufflinks 1.703        
cufflinks 3.42        
cufflinks 1.734        
cufflinks 2.808        
cufflinks 2.72        
cufflinks 5.377       High
cufflinks 1.692        
cufflinks 0.826        
cufflinks 3.131        
cufflinks 0.448        
cufflinks 4.801       High
cufflinks 0.42        
cufflinks 0.193       Low
cufflinks 4.559       High

0 Strain