Gene : Seita.9G015300 S. italica v2.2
Defline:  (1 of 2) 2.1.1.165 - Methyl halide transferase / Methyl chloride transferase Genomic Order:  153
Name:  ? Seita.9G015300 Secondary Identifier:  ? PAC:32692639
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6730 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G015300 0.5kb upstream 0.5kb upstream 2926 true scaffold_9: 790996-793921 Setaria italica
Seita.9G015300 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 793422-793921 Setaria italica
Seita.9G015300 0.5kb downstream 0.5kb downstream 2926 true scaffold_9: 790496-793421 Setaria italica
Seita.9G015300 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 790496-790995 Setaria italica
Seita.9G015300 1.0kb upstream 1.0kb upstream 3426 true scaffold_9: 790996-794421 Setaria italica
Seita.9G015300 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 793422-794421 Setaria italica
Seita.9G015300 1.0kb downstream 1.0kb downstream 3426 true scaffold_9: 789996-793421 Setaria italica
Seita.9G015300 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 789996-790995 Setaria italica
Seita.9G015300 2.0kb upstream 2.0kb upstream 4426 true scaffold_9: 790996-795421 Setaria italica
Seita.9G015300 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 793422-795421 Setaria italica
Seita.9G015300 2.0kb downstream 2.0kb downstream 4426 true scaffold_9: 788996-793421 Setaria italica
Seita.9G015300 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 788996-790995 Setaria italica
Seita.9G015300 5.0kb upstream 5.0kb upstream 7426 true scaffold_9: 790996-798421 Setaria italica
Seita.9G015300 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 793422-798421 Setaria italica
Seita.9G015300 5.0kb downstream 5.0kb downstream 7426 true scaffold_9: 785996-793421 Setaria italica
Seita.9G015300 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 785996-790995 Setaria italica
Seita.9G015300 10.0kb upstream 10.0kb upstream 12426 true scaffold_9: 790996-803421 Setaria italica
Seita.9G015300 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 793422-803421 Setaria italica
Seita.9G015300 10.0kb downstream 10.0kb downstream 12426 true scaffold_9: 780996-793421 Setaria italica
Seita.9G015300 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 780996-790995 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040998 5273 Angiosperm View MSA
122178363 5267 Panicoideae View MSA
124577239 5269 Grass View MSA
121346954 5274 Embryophyte View MSA
123424412 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.769        
cufflinks 0.317        
cufflinks 48.899     High High
cufflinks 91.9     High High
cufflinks 36.617     High High
cufflinks 0.276        
cufflinks 0.476        
cufflinks 38.013     High High
cufflinks 4.005        
cufflinks 0.328     Low  
cufflinks 0.381        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.041     Low Low
cufflinks 8.73        
cufflinks 0.023     Low Low
cufflinks 3.146        
cufflinks 0.014     Low Low
cufflinks 0.267        
cufflinks 87.6     High High
cufflinks 0.049     Low Low

0 Strain