Gene : Seita.9G014200 S. italica v2.2
Defline:  (1 of 1) PTHR12428:SF18 - ALBINO3-LIKE PROTEIN 1, CHLOROPLASTIC Genomic Order:  142
Name:  ? Seita.9G014200 Secondary Identifier:  ? PAC:32690286
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G014200 0.5kb upstream 0.5kb upstream 8998 true scaffold_9: 739749-748746 Setaria italica
Seita.9G014200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 739749-740248 Setaria italica
Seita.9G014200 0.5kb downstream 0.5kb downstream 8998 true scaffold_9: 740249-749246 Setaria italica
Seita.9G014200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 748747-749246 Setaria italica
Seita.9G014200 1.0kb upstream 1.0kb upstream 9498 true scaffold_9: 739249-748746 Setaria italica
Seita.9G014200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 739249-740248 Setaria italica
Seita.9G014200 1.0kb downstream 1.0kb downstream 9498 true scaffold_9: 740249-749746 Setaria italica
Seita.9G014200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 748747-749746 Setaria italica
Seita.9G014200 2.0kb upstream 2.0kb upstream 10498 true scaffold_9: 738249-748746 Setaria italica
Seita.9G014200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 738249-740248 Setaria italica
Seita.9G014200 2.0kb downstream 2.0kb downstream 10498 true scaffold_9: 740249-750746 Setaria italica
Seita.9G014200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 748747-750746 Setaria italica
Seita.9G014200 5.0kb upstream 5.0kb upstream 13498 true scaffold_9: 735249-748746 Setaria italica
Seita.9G014200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 735249-740248 Setaria italica
Seita.9G014200 5.0kb downstream 5.0kb downstream 13498 true scaffold_9: 740249-753746 Setaria italica
Seita.9G014200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 748747-753746 Setaria italica
Seita.9G014200 10.0kb upstream 10.0kb upstream 18498 true scaffold_9: 730249-748746 Setaria italica
Seita.9G014200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 730249-740248 Setaria italica
Seita.9G014200 10.0kb downstream 10.0kb downstream 18498 true scaffold_9: 740249-758746 Setaria italica
Seita.9G014200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 748747-758746 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181891 5267 Panicoideae View MSA
124574395 5269 Grass View MSA
122043512 5273 Angiosperm View MSA
121310140 5274 Embryophyte View MSA
123428331 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.742        
cufflinks 4.803        
cufflinks 4.567        
cufflinks 3.95        
cufflinks 5.347        
cufflinks 5.529        
cufflinks 7.665        
cufflinks 10.302       High
cufflinks 16.673     High High
cufflinks 5.906        
cufflinks 4.095        
cufflinks 3.065       Low
cufflinks 2.554       Low
cufflinks 10.23       High
cufflinks 4.415        
cufflinks 4.583        
cufflinks 4.883        
cufflinks 5.556        
cufflinks 4.581        
cufflinks 5.202        

0 Strain