Gene : Seita.9G019700 S. italica v2.2
Defline:  (1 of 2) PTHR37228:SF1 - RIBOSOMAL PROTEIN S21 FAMILY PROTEIN Genomic Order:  197
Name:  ? Seita.9G019700 Secondary Identifier:  ? PAC:32690844
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G019700 0.5kb upstream 0.5kb upstream 4012 true scaffold_9: 1029354-1033365 Setaria italica
Seita.9G019700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 1029354-1029853 Setaria italica
Seita.9G019700 0.5kb downstream 0.5kb downstream 4012 true scaffold_9: 1029854-1033865 Setaria italica
Seita.9G019700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 1033366-1033865 Setaria italica
Seita.9G019700 1.0kb upstream 1.0kb upstream 4512 true scaffold_9: 1028854-1033365 Setaria italica
Seita.9G019700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 1028854-1029853 Setaria italica
Seita.9G019700 1.0kb downstream 1.0kb downstream 4512 true scaffold_9: 1029854-1034365 Setaria italica
Seita.9G019700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 1033366-1034365 Setaria italica
Seita.9G019700 2.0kb upstream 2.0kb upstream 5512 true scaffold_9: 1027854-1033365 Setaria italica
Seita.9G019700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 1027854-1029853 Setaria italica
Seita.9G019700 2.0kb downstream 2.0kb downstream 5512 true scaffold_9: 1029854-1035365 Setaria italica
Seita.9G019700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 1033366-1035365 Setaria italica
Seita.9G019700 5.0kb upstream 5.0kb upstream 8512 true scaffold_9: 1024854-1033365 Setaria italica
Seita.9G019700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 1024854-1029853 Setaria italica
Seita.9G019700 5.0kb downstream 5.0kb downstream 8512 true scaffold_9: 1029854-1038365 Setaria italica
Seita.9G019700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 1033366-1038365 Setaria italica
Seita.9G019700 10.0kb upstream 10.0kb upstream 13512 true scaffold_9: 1019854-1033365 Setaria italica
Seita.9G019700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 1019854-1029853 Setaria italica
Seita.9G019700 10.0kb downstream 10.0kb downstream 13512 true scaffold_9: 1029854-1043365 Setaria italica
Seita.9G019700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 1033366-1043365 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122193634 5267 Panicoideae View MSA
124570571 5269 Grass View MSA
122049752 5273 Angiosperm View MSA
121311575 5274 Embryophyte View MSA
123348853 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.033        
cufflinks 2.376       High
cufflinks 0.684        
cufflinks 0.733        
cufflinks 0.598       Low
cufflinks 2.667       High
cufflinks 0.992        
cufflinks 2.531       High
cufflinks 1.209        
cufflinks 3.548       High
cufflinks 0.969        
cufflinks 1.047        
cufflinks 1.095        
cufflinks 2.25       High
cufflinks 1.284        
cufflinks 0.556       Low
cufflinks 1.693        
cufflinks 0.364       Low
cufflinks 0.943        
cufflinks 2.191        

0 Strain