Gene : Seita.9G020500 S. italica v2.2
Defline:  (1 of 2) 6.3.4.21 - Nicotinate phosphoribosyltransferase / Nicotinic acid phosphoribosyltransferase Genomic Order:  205
Name:  ? Seita.9G020500 Secondary Identifier:  ? PAC:32687117
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5381 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G020500 0.5kb upstream 0.5kb upstream 7812 true scaffold_9: 1073362-1081173 Setaria italica
Seita.9G020500 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 1080674-1081173 Setaria italica
Seita.9G020500 0.5kb downstream 0.5kb downstream 7812 true scaffold_9: 1072862-1080673 Setaria italica
Seita.9G020500 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 1072862-1073361 Setaria italica
Seita.9G020500 1.0kb upstream 1.0kb upstream 8312 true scaffold_9: 1073362-1081673 Setaria italica
Seita.9G020500 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 1080674-1081673 Setaria italica
Seita.9G020500 1.0kb downstream 1.0kb downstream 8312 true scaffold_9: 1072362-1080673 Setaria italica
Seita.9G020500 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 1072362-1073361 Setaria italica
Seita.9G020500 2.0kb upstream 2.0kb upstream 9312 true scaffold_9: 1073362-1082673 Setaria italica
Seita.9G020500 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 1080674-1082673 Setaria italica
Seita.9G020500 2.0kb downstream 2.0kb downstream 9312 true scaffold_9: 1071362-1080673 Setaria italica
Seita.9G020500 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 1071362-1073361 Setaria italica
Seita.9G020500 5.0kb upstream 5.0kb upstream 12312 true scaffold_9: 1073362-1085673 Setaria italica
Seita.9G020500 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 1080674-1085673 Setaria italica
Seita.9G020500 5.0kb downstream 5.0kb downstream 12312 true scaffold_9: 1068362-1080673 Setaria italica
Seita.9G020500 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 1068362-1073361 Setaria italica
Seita.9G020500 10.0kb upstream 10.0kb upstream 17312 true scaffold_9: 1073362-1090673 Setaria italica
Seita.9G020500 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 1080674-1090673 Setaria italica
Seita.9G020500 10.0kb downstream 10.0kb downstream 17312 true scaffold_9: 1063362-1080673 Setaria italica
Seita.9G020500 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 1063362-1073361 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182645 5267 Panicoideae View MSA
124588747 5269 Grass View MSA
122047355 5273 Angiosperm View MSA
121346796 5274 Embryophyte View MSA
123425475 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.04       High
cufflinks 4.323       High
cufflinks 2.086        
cufflinks 2.08        
cufflinks 1.823       Low
cufflinks 3.931       High
cufflinks 3.956       High
cufflinks 3.151        
cufflinks 2.422        
cufflinks 2.354        
cufflinks 3.21        
cufflinks 2.028        
cufflinks 2.12        
cufflinks 2.552        
cufflinks 2.416        
cufflinks 3.012        
cufflinks 2.508        
cufflinks 2.017        
cufflinks 2.14        
cufflinks 2.238        

0 Strain