Gene : Seita.9G018500 S. italica v2.2
Defline:  (1 of 1) PTHR32161:SF8 - PROTEIN TAG-10, ISOFORM A Genomic Order:  185
Name:  ? Seita.9G018500 Secondary Identifier:  ? PAC:32686918
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G018500 0.5kb upstream 0.5kb upstream 3105 true scaffold_9: 961558-964662 Setaria italica
Seita.9G018500 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 964163-964662 Setaria italica
Seita.9G018500 0.5kb downstream 0.5kb downstream 3105 true scaffold_9: 961058-964162 Setaria italica
Seita.9G018500 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 961058-961557 Setaria italica
Seita.9G018500 1.0kb upstream 1.0kb upstream 3605 true scaffold_9: 961558-965162 Setaria italica
Seita.9G018500 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 964163-965162 Setaria italica
Seita.9G018500 1.0kb downstream 1.0kb downstream 3605 true scaffold_9: 960558-964162 Setaria italica
Seita.9G018500 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 960558-961557 Setaria italica
Seita.9G018500 2.0kb upstream 2.0kb upstream 4605 true scaffold_9: 961558-966162 Setaria italica
Seita.9G018500 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 964163-966162 Setaria italica
Seita.9G018500 2.0kb downstream 2.0kb downstream 4605 true scaffold_9: 959558-964162 Setaria italica
Seita.9G018500 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 959558-961557 Setaria italica
Seita.9G018500 5.0kb upstream 5.0kb upstream 7605 true scaffold_9: 961558-969162 Setaria italica
Seita.9G018500 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 964163-969162 Setaria italica
Seita.9G018500 5.0kb downstream 5.0kb downstream 7605 true scaffold_9: 956558-964162 Setaria italica
Seita.9G018500 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 956558-961557 Setaria italica
Seita.9G018500 10.0kb upstream 10.0kb upstream 12605 true scaffold_9: 961558-974162 Setaria italica
Seita.9G018500 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 964163-974162 Setaria italica
Seita.9G018500 10.0kb downstream 10.0kb downstream 12605 true scaffold_9: 951558-964162 Setaria italica
Seita.9G018500 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 951558-961557 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187216 5267 Panicoideae View MSA
124573836 5269 Grass View MSA
122050472 5273 Angiosperm View MSA
121347738 5274 Embryophyte View MSA
123424154 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.577        
cufflinks 5.322        
cufflinks 65.506     High High
cufflinks 52.572     High High
cufflinks 32.705     High High
cufflinks 6.52        
cufflinks 9.726        
cufflinks 15.831     High  
cufflinks 8.183        
cufflinks 7.997        
cufflinks 4.032        
cufflinks 1.02       Low
cufflinks 2.881        
cufflinks 42.736     High High
cufflinks 0.862       Low
cufflinks 18.604     High  
cufflinks 2.165       Low
cufflinks 7.69        
cufflinks 36.502     High High
cufflinks 2.167       Low

0 Strain