Gene : Seita.9G022900 S. italica v2.2
Defline:  (1 of 1) PTHR12998:SF0 - TRNA:M(4)X MODIFICATION ENZYME TRM13 HOMOLOG Genomic Order:  229
Name:  ? Seita.9G022900 Secondary Identifier:  ? PAC:32686745
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6829 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G022900 0.5kb upstream 0.5kb upstream 3567 true scaffold_9: 1240741-1244307 Setaria italica
Seita.9G022900 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 1243808-1244307 Setaria italica
Seita.9G022900 0.5kb downstream 0.5kb downstream 3567 true scaffold_9: 1240241-1243807 Setaria italica
Seita.9G022900 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 1240241-1240740 Setaria italica
Seita.9G022900 1.0kb upstream 1.0kb upstream 4067 true scaffold_9: 1240741-1244807 Setaria italica
Seita.9G022900 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 1243808-1244807 Setaria italica
Seita.9G022900 1.0kb downstream 1.0kb downstream 4067 true scaffold_9: 1239741-1243807 Setaria italica
Seita.9G022900 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 1239741-1240740 Setaria italica
Seita.9G022900 2.0kb upstream 2.0kb upstream 5067 true scaffold_9: 1240741-1245807 Setaria italica
Seita.9G022900 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 1243808-1245807 Setaria italica
Seita.9G022900 2.0kb downstream 2.0kb downstream 5067 true scaffold_9: 1238741-1243807 Setaria italica
Seita.9G022900 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 1238741-1240740 Setaria italica
Seita.9G022900 5.0kb upstream 5.0kb upstream 8067 true scaffold_9: 1240741-1248807 Setaria italica
Seita.9G022900 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 1243808-1248807 Setaria italica
Seita.9G022900 5.0kb downstream 5.0kb downstream 8067 true scaffold_9: 1235741-1243807 Setaria italica
Seita.9G022900 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 1235741-1240740 Setaria italica
Seita.9G022900 10.0kb upstream 10.0kb upstream 13067 true scaffold_9: 1240741-1253807 Setaria italica
Seita.9G022900 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 1243808-1253807 Setaria italica
Seita.9G022900 10.0kb downstream 10.0kb downstream 13067 true scaffold_9: 1230741-1243807 Setaria italica
Seita.9G022900 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 1230741-1240740 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180975 5267 Panicoideae View MSA
124581459 5269 Grass View MSA
122046541 5273 Angiosperm View MSA
121347915 5274 Embryophyte View MSA
123424709 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.838        
cufflinks 2.097        
cufflinks 2.307        
cufflinks 2.402        
cufflinks 1.856        
cufflinks 1.842        
cufflinks 1.309       Low
cufflinks 2.096        
cufflinks 1.266       Low
cufflinks 1.903        
cufflinks 1.569        
cufflinks 2.486        
cufflinks 1.335       Low
cufflinks 2.64       High
cufflinks 1.871        
cufflinks 1.644        
cufflinks 3.444       High
cufflinks 3.109       High
cufflinks 1.733        
cufflinks 1.817        

0 Strain