Gene : Seita.9G020600 S. italica v2.2
Defline:  (1 of 3) PTHR13301//PTHR13301:SF73 - X-BOX TRANSCRIPTION FACTOR-RELATED Genomic Order:  206
Name:  ? Seita.9G020600 Secondary Identifier:  ? PAC:32691856
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-1001 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G020600 0.5kb upstream 0.5kb upstream 6208 true scaffold_9: 1087917-1094124 Setaria italica
Seita.9G020600 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 1093625-1094124 Setaria italica
Seita.9G020600 0.5kb downstream 0.5kb downstream 6208 true scaffold_9: 1087417-1093624 Setaria italica
Seita.9G020600 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 1087417-1087916 Setaria italica
Seita.9G020600 1.0kb upstream 1.0kb upstream 6708 true scaffold_9: 1087917-1094624 Setaria italica
Seita.9G020600 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 1093625-1094624 Setaria italica
Seita.9G020600 1.0kb downstream 1.0kb downstream 6708 true scaffold_9: 1086917-1093624 Setaria italica
Seita.9G020600 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 1086917-1087916 Setaria italica
Seita.9G020600 2.0kb upstream 2.0kb upstream 7708 true scaffold_9: 1087917-1095624 Setaria italica
Seita.9G020600 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 1093625-1095624 Setaria italica
Seita.9G020600 2.0kb downstream 2.0kb downstream 7708 true scaffold_9: 1085917-1093624 Setaria italica
Seita.9G020600 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 1085917-1087916 Setaria italica
Seita.9G020600 5.0kb upstream 5.0kb upstream 10708 true scaffold_9: 1087917-1098624 Setaria italica
Seita.9G020600 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 1093625-1098624 Setaria italica
Seita.9G020600 5.0kb downstream 5.0kb downstream 10708 true scaffold_9: 1082917-1093624 Setaria italica
Seita.9G020600 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 1082917-1087916 Setaria italica
Seita.9G020600 10.0kb upstream 10.0kb upstream 15708 true scaffold_9: 1087917-1103624 Setaria italica
Seita.9G020600 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 1093625-1103624 Setaria italica
Seita.9G020600 10.0kb downstream 10.0kb downstream 15708 true scaffold_9: 1077917-1093624 Setaria italica
Seita.9G020600 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 1077917-1087916 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177739 5267 Panicoideae View MSA
124582866 5269 Grass View MSA
122048668 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 100.408     High  
cufflinks 141.881     High High
cufflinks 15.853     High Low
cufflinks 16.814     High Low
cufflinks 51.753     High  
cufflinks 140.003     High High
cufflinks 171.249     High High
cufflinks 59.367     High  
cufflinks 108.345     High  
cufflinks 52.318     High  
cufflinks 123.507     High High
cufflinks 29.684     High  
cufflinks 50.85     High  
cufflinks 23.9     High Low
cufflinks 70.586     High  
cufflinks 70.87     High  
cufflinks 33.29     High  
cufflinks 41.111     High  
cufflinks 23.392     High Low
cufflinks 54.338     High  

0 Strain