Gene : Seita.9G021600 S. italica v2.2
Defline:  (1 of 1) PTHR10792:SF8 - RIBOSOME BIOGENESIS PROTEIN RLP24-RELATED Genomic Order:  216
Name:  ? Seita.9G021600 Secondary Identifier:  ? PAC:32686956
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G021600 0.5kb upstream 0.5kb upstream 3379 true scaffold_9: 1154977-1158355 Setaria italica
Seita.9G021600 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 1157856-1158355 Setaria italica
Seita.9G021600 0.5kb downstream 0.5kb downstream 3379 true scaffold_9: 1154477-1157855 Setaria italica
Seita.9G021600 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 1154477-1154976 Setaria italica
Seita.9G021600 1.0kb upstream 1.0kb upstream 3879 true scaffold_9: 1154977-1158855 Setaria italica
Seita.9G021600 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 1157856-1158855 Setaria italica
Seita.9G021600 1.0kb downstream 1.0kb downstream 3879 true scaffold_9: 1153977-1157855 Setaria italica
Seita.9G021600 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 1153977-1154976 Setaria italica
Seita.9G021600 2.0kb upstream 2.0kb upstream 4879 true scaffold_9: 1154977-1159855 Setaria italica
Seita.9G021600 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 1157856-1159855 Setaria italica
Seita.9G021600 2.0kb downstream 2.0kb downstream 4879 true scaffold_9: 1152977-1157855 Setaria italica
Seita.9G021600 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 1152977-1154976 Setaria italica
Seita.9G021600 5.0kb upstream 5.0kb upstream 7879 true scaffold_9: 1154977-1162855 Setaria italica
Seita.9G021600 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 1157856-1162855 Setaria italica
Seita.9G021600 5.0kb downstream 5.0kb downstream 7879 true scaffold_9: 1149977-1157855 Setaria italica
Seita.9G021600 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 1149977-1154976 Setaria italica
Seita.9G021600 10.0kb upstream 10.0kb upstream 12879 true scaffold_9: 1154977-1167855 Setaria italica
Seita.9G021600 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 1157856-1167855 Setaria italica
Seita.9G021600 10.0kb downstream 10.0kb downstream 12879 true scaffold_9: 1144977-1157855 Setaria italica
Seita.9G021600 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 1144977-1154976 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179375 5267 Panicoideae View MSA
124582722 5269 Grass View MSA
122045898 5273 Angiosperm View MSA
121346492 5274 Embryophyte View MSA
123427829 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 45.273     High  
cufflinks 32.473     High  
cufflinks 9.551       Low
cufflinks 8.323       Low
cufflinks 13.268     High Low
cufflinks 33.692     High  
cufflinks 34.195     High  
cufflinks 43.838     High  
cufflinks 28.614     High  
cufflinks 50.766     High  
cufflinks 31.454     High  
cufflinks 58.303     High High
cufflinks 39.834     High  
cufflinks 14.515     High Low
cufflinks 37.308     High  
cufflinks 48.535     High  
cufflinks 61.928     High High
cufflinks 69.91     High High
cufflinks 11.488     High Low
cufflinks 44.569     High  

0 Strain