Gene : Seita.9G025100 S. italica v2.2
Defline:  (1 of 1) KOG2050 - Puf family RNA-binding protein Genomic Order:  251
Name:  ? Seita.9G025100 Secondary Identifier:  ? PAC:32691390
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G025100 0.5kb upstream 0.5kb upstream 5946 true scaffold_9: 1350856-1356801 Setaria italica
Seita.9G025100 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 1356302-1356801 Setaria italica
Seita.9G025100 0.5kb downstream 0.5kb downstream 5946 true scaffold_9: 1350356-1356301 Setaria italica
Seita.9G025100 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 1350356-1350855 Setaria italica
Seita.9G025100 1.0kb upstream 1.0kb upstream 6446 true scaffold_9: 1350856-1357301 Setaria italica
Seita.9G025100 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 1356302-1357301 Setaria italica
Seita.9G025100 1.0kb downstream 1.0kb downstream 6446 true scaffold_9: 1349856-1356301 Setaria italica
Seita.9G025100 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 1349856-1350855 Setaria italica
Seita.9G025100 2.0kb upstream 2.0kb upstream 7446 true scaffold_9: 1350856-1358301 Setaria italica
Seita.9G025100 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 1356302-1358301 Setaria italica
Seita.9G025100 2.0kb downstream 2.0kb downstream 7446 true scaffold_9: 1348856-1356301 Setaria italica
Seita.9G025100 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 1348856-1350855 Setaria italica
Seita.9G025100 5.0kb upstream 5.0kb upstream 10446 true scaffold_9: 1350856-1361301 Setaria italica
Seita.9G025100 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 1356302-1361301 Setaria italica
Seita.9G025100 5.0kb downstream 5.0kb downstream 10446 true scaffold_9: 1345856-1356301 Setaria italica
Seita.9G025100 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 1345856-1350855 Setaria italica
Seita.9G025100 10.0kb upstream 10.0kb upstream 15446 true scaffold_9: 1350856-1366301 Setaria italica
Seita.9G025100 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 1356302-1366301 Setaria italica
Seita.9G025100 10.0kb downstream 10.0kb downstream 15446 true scaffold_9: 1340856-1356301 Setaria italica
Seita.9G025100 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 1340856-1350855 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180917 5267 Panicoideae View MSA
124578371 5269 Grass View MSA
122045546 5273 Angiosperm View MSA
121344059 5274 Embryophyte View MSA
123426450 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.441     High  
cufflinks 14.364     High  
cufflinks 7.973        
cufflinks 5.326       Low
cufflinks 5.608       Low
cufflinks 16.586     High High
cufflinks 8.534        
cufflinks 10.279        
cufflinks 11.954        
cufflinks 8.69        
cufflinks 12.31        
cufflinks 14.74     High  
cufflinks 10.962        
cufflinks 9.993        
cufflinks 13.653        
cufflinks 11.886        
cufflinks 14.793     High  
cufflinks 16.491     High High
cufflinks 5.361       Low
cufflinks 14.507     High  

0 Strain