Gene : Seita.9G023700 S. italica v2.2
Defline:  (1 of 2) PTHR11073//PTHR11073:SF17 - CALRETICULIN AND CALNEXIN Genomic Order:  237
Name:  ? Seita.9G023700 Secondary Identifier:  ? PAC:32688516
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G023700 0.5kb upstream 0.5kb upstream 4045 true scaffold_9: 1288172-1292216 Setaria italica
Seita.9G023700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 1288172-1288671 Setaria italica
Seita.9G023700 0.5kb downstream 0.5kb downstream 4045 true scaffold_9: 1288672-1292716 Setaria italica
Seita.9G023700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 1292217-1292716 Setaria italica
Seita.9G023700 1.0kb upstream 1.0kb upstream 4545 true scaffold_9: 1287672-1292216 Setaria italica
Seita.9G023700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 1287672-1288671 Setaria italica
Seita.9G023700 1.0kb downstream 1.0kb downstream 4545 true scaffold_9: 1288672-1293216 Setaria italica
Seita.9G023700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 1292217-1293216 Setaria italica
Seita.9G023700 2.0kb upstream 2.0kb upstream 5545 true scaffold_9: 1286672-1292216 Setaria italica
Seita.9G023700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 1286672-1288671 Setaria italica
Seita.9G023700 2.0kb downstream 2.0kb downstream 5545 true scaffold_9: 1288672-1294216 Setaria italica
Seita.9G023700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 1292217-1294216 Setaria italica
Seita.9G023700 5.0kb upstream 5.0kb upstream 8545 true scaffold_9: 1283672-1292216 Setaria italica
Seita.9G023700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 1283672-1288671 Setaria italica
Seita.9G023700 5.0kb downstream 5.0kb downstream 8545 true scaffold_9: 1288672-1297216 Setaria italica
Seita.9G023700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 1292217-1297216 Setaria italica
Seita.9G023700 10.0kb upstream 10.0kb upstream 13545 true scaffold_9: 1278672-1292216 Setaria italica
Seita.9G023700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 1278672-1288671 Setaria italica
Seita.9G023700 10.0kb downstream 10.0kb downstream 13545 true scaffold_9: 1288672-1302216 Setaria italica
Seita.9G023700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 1292217-1302216 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192062 5267 Panicoideae View MSA
124586761 5269 Grass View MSA
122050061 5273 Angiosperm View MSA
121351092 5274 Embryophyte View MSA
123428269 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.918        
cufflinks 18.124     High High
cufflinks 0.721       Low
cufflinks 0.368       Low
cufflinks 0.396       Low
cufflinks 8.61        
cufflinks 5.092        
cufflinks 8.373        
cufflinks 4.483        
cufflinks 10.343       High
cufflinks 4.868        
cufflinks 5.386        
cufflinks 6.241        
cufflinks 1.278        
cufflinks 5.76        
cufflinks 1.672        
cufflinks 5.062        
cufflinks 1.272        
cufflinks 2.727        
cufflinks 6.386        

0 Strain