Gene : Seita.9G026500 S. italica v2.2
Defline:  (1 of 2) PTHR13068:SF4 - TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN Genomic Order:  265
Name:  ? Seita.9G026500 Secondary Identifier:  ? PAC:32691644
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G026500 0.5kb upstream 0.5kb upstream 4502 true scaffold_9: 1421290-1425791 Setaria italica
Seita.9G026500 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 1421290-1421789 Setaria italica
Seita.9G026500 0.5kb downstream 0.5kb downstream 4502 true scaffold_9: 1421790-1426291 Setaria italica
Seita.9G026500 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 1425792-1426291 Setaria italica
Seita.9G026500 1.0kb upstream 1.0kb upstream 5002 true scaffold_9: 1420790-1425791 Setaria italica
Seita.9G026500 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 1420790-1421789 Setaria italica
Seita.9G026500 1.0kb downstream 1.0kb downstream 5002 true scaffold_9: 1421790-1426791 Setaria italica
Seita.9G026500 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 1425792-1426791 Setaria italica
Seita.9G026500 2.0kb upstream 2.0kb upstream 6002 true scaffold_9: 1419790-1425791 Setaria italica
Seita.9G026500 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 1419790-1421789 Setaria italica
Seita.9G026500 2.0kb downstream 2.0kb downstream 6002 true scaffold_9: 1421790-1427791 Setaria italica
Seita.9G026500 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 1425792-1427791 Setaria italica
Seita.9G026500 5.0kb upstream 5.0kb upstream 9002 true scaffold_9: 1416790-1425791 Setaria italica
Seita.9G026500 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 1416790-1421789 Setaria italica
Seita.9G026500 5.0kb downstream 5.0kb downstream 9002 true scaffold_9: 1421790-1430791 Setaria italica
Seita.9G026500 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 1425792-1430791 Setaria italica
Seita.9G026500 10.0kb upstream 10.0kb upstream 14002 true scaffold_9: 1411790-1425791 Setaria italica
Seita.9G026500 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 1411790-1421789 Setaria italica
Seita.9G026500 10.0kb downstream 10.0kb downstream 14002 true scaffold_9: 1421790-1435791 Setaria italica
Seita.9G026500 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 1425792-1435791 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181992 5267 Panicoideae View MSA
124571237 5269 Grass View MSA
122044224 5273 Angiosperm View MSA
121347901 5274 Embryophyte View MSA
123427998 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.392        
cufflinks 4.058        
cufflinks 6.552       High
cufflinks 3.762        
cufflinks 5.166        
cufflinks 3.654        
cufflinks 5.81        
cufflinks 6.728       High
cufflinks 7.62       High
cufflinks 1.879       Low
cufflinks 2.101        
cufflinks 1.543       Low
cufflinks 1.507       Low
cufflinks 7.871       High
cufflinks 1.876       Low
cufflinks 6.776       High
cufflinks 2.162        
cufflinks 2.484        
cufflinks 3.247        
cufflinks 1.904       Low

0 Strain