Gene : Seita.9G027100 S. italica v2.2
Defline:  (1 of 1) PTHR11516:SF25 - PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA-3, CHLOROPLASTIC Genomic Order:  271
Name:  ? Seita.9G027100 Secondary Identifier:  ? PAC:32686969
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5173 Setaria italica pathologic  
Sitalica PWY-5464 Setaria italica pathologic  
Sitalica PYRUVDEHYD-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G027100 0.5kb upstream 0.5kb upstream 4441 true scaffold_9: 1476993-1481433 Setaria italica
Seita.9G027100 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 1480934-1481433 Setaria italica
Seita.9G027100 0.5kb downstream 0.5kb downstream 4441 true scaffold_9: 1476493-1480933 Setaria italica
Seita.9G027100 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 1476493-1476992 Setaria italica
Seita.9G027100 1.0kb upstream 1.0kb upstream 4941 true scaffold_9: 1476993-1481933 Setaria italica
Seita.9G027100 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 1480934-1481933 Setaria italica
Seita.9G027100 1.0kb downstream 1.0kb downstream 4941 true scaffold_9: 1475993-1480933 Setaria italica
Seita.9G027100 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 1475993-1476992 Setaria italica
Seita.9G027100 2.0kb upstream 2.0kb upstream 5941 true scaffold_9: 1476993-1482933 Setaria italica
Seita.9G027100 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 1480934-1482933 Setaria italica
Seita.9G027100 2.0kb downstream 2.0kb downstream 5941 true scaffold_9: 1474993-1480933 Setaria italica
Seita.9G027100 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 1474993-1476992 Setaria italica
Seita.9G027100 5.0kb upstream 5.0kb upstream 8941 true scaffold_9: 1476993-1485933 Setaria italica
Seita.9G027100 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 1480934-1485933 Setaria italica
Seita.9G027100 5.0kb downstream 5.0kb downstream 8941 true scaffold_9: 1471993-1480933 Setaria italica
Seita.9G027100 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 1471993-1476992 Setaria italica
Seita.9G027100 10.0kb upstream 10.0kb upstream 13941 true scaffold_9: 1476993-1490933 Setaria italica
Seita.9G027100 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 1480934-1490933 Setaria italica
Seita.9G027100 10.0kb downstream 10.0kb downstream 13941 true scaffold_9: 1466993-1480933 Setaria italica
Seita.9G027100 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 1466993-1476992 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181161 5267 Panicoideae View MSA
124579734 5269 Grass View MSA
122044804 5273 Angiosperm View MSA
121347425 5274 Embryophyte View MSA
123423942 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 40.301     High  
cufflinks 45.896     High  
cufflinks 37.148     High  
cufflinks 42.871     High  
cufflinks 36.429     High  
cufflinks 39.486     High  
cufflinks 56.645     High High
cufflinks 48.145     High  
cufflinks 52.648     High  
cufflinks 38.555     High  
cufflinks 52.833     High  
cufflinks 34.537     High  
cufflinks 27.96     High Low
cufflinks 15.039     High Low
cufflinks 52.736     High  
cufflinks 58.739     High High
cufflinks 42.266     High  
cufflinks 49.06     High  
cufflinks 27.211     High Low
cufflinks 47.185     High  

0 Strain