Gene : Seita.9G031800 S. italica v2.2
Defline:  (1 of 57) PF03514 - GRAS domain family (GRAS) Genomic Order:  318
Name:  ? Seita.9G031800 Secondary Identifier:  ? PAC:32686814
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G031800 0.5kb upstream 0.5kb upstream 3390 true scaffold_9: 1713384-1716773 Setaria italica
Seita.9G031800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 1716274-1716773 Setaria italica
Seita.9G031800 0.5kb downstream 0.5kb downstream 3390 true scaffold_9: 1712884-1716273 Setaria italica
Seita.9G031800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 1712884-1713383 Setaria italica
Seita.9G031800 1.0kb upstream 1.0kb upstream 3890 true scaffold_9: 1713384-1717273 Setaria italica
Seita.9G031800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 1716274-1717273 Setaria italica
Seita.9G031800 1.0kb downstream 1.0kb downstream 3890 true scaffold_9: 1712384-1716273 Setaria italica
Seita.9G031800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 1712384-1713383 Setaria italica
Seita.9G031800 2.0kb upstream 2.0kb upstream 4890 true scaffold_9: 1713384-1718273 Setaria italica
Seita.9G031800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 1716274-1718273 Setaria italica
Seita.9G031800 2.0kb downstream 2.0kb downstream 4890 true scaffold_9: 1711384-1716273 Setaria italica
Seita.9G031800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 1711384-1713383 Setaria italica
Seita.9G031800 5.0kb upstream 5.0kb upstream 7890 true scaffold_9: 1713384-1721273 Setaria italica
Seita.9G031800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 1716274-1721273 Setaria italica
Seita.9G031800 5.0kb downstream 5.0kb downstream 7890 true scaffold_9: 1708384-1716273 Setaria italica
Seita.9G031800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 1708384-1713383 Setaria italica
Seita.9G031800 10.0kb upstream 10.0kb upstream 12890 true scaffold_9: 1713384-1726273 Setaria italica
Seita.9G031800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 1716274-1726273 Setaria italica
Seita.9G031800 10.0kb downstream 10.0kb downstream 12890 true scaffold_9: 1703384-1716273 Setaria italica
Seita.9G031800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 1703384-1713383 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122032262 5273 Angiosperm View MSA
122194775 5267 Panicoideae View MSA
124575610 5269 Grass View MSA
121351918 5274 Embryophyte View MSA
123382411 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.229        
cufflinks 6.341        
cufflinks 4.308        
cufflinks 3.894        
cufflinks 3.455       Low
cufflinks 7.096        
cufflinks 4.061        
cufflinks 4.035        
cufflinks 2.561       Low
cufflinks 5.553        
cufflinks 8.226        
cufflinks 14.231     High High
cufflinks 9.845        
cufflinks 5.866        
cufflinks 16.702     High High
cufflinks 4.475        
cufflinks 16.131     High High
cufflinks 7.78        
cufflinks 5.67        
cufflinks 13.236       High

0 Strain