Gene : Seita.9G035900 S. italica v2.2
Defline:  (1 of 3) PTHR11652:SF16 - 40S RIBOSOMAL PROTEIN S23-1 Genomic Order:  359
Name:  ? Seita.9G035900 Secondary Identifier:  ? PAC:32692816
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G035900 0.5kb upstream 0.5kb upstream 3252 true scaffold_9: 1968941-1972192 Setaria italica
Seita.9G035900 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 1968941-1969440 Setaria italica
Seita.9G035900 0.5kb downstream 0.5kb downstream 3252 true scaffold_9: 1969441-1972692 Setaria italica
Seita.9G035900 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 1972193-1972692 Setaria italica
Seita.9G035900 1.0kb upstream 1.0kb upstream 3752 true scaffold_9: 1968441-1972192 Setaria italica
Seita.9G035900 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 1968441-1969440 Setaria italica
Seita.9G035900 1.0kb downstream 1.0kb downstream 3752 true scaffold_9: 1969441-1973192 Setaria italica
Seita.9G035900 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 1972193-1973192 Setaria italica
Seita.9G035900 2.0kb upstream 2.0kb upstream 4752 true scaffold_9: 1967441-1972192 Setaria italica
Seita.9G035900 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 1967441-1969440 Setaria italica
Seita.9G035900 2.0kb downstream 2.0kb downstream 4752 true scaffold_9: 1969441-1974192 Setaria italica
Seita.9G035900 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 1972193-1974192 Setaria italica
Seita.9G035900 5.0kb upstream 5.0kb upstream 7752 true scaffold_9: 1964441-1972192 Setaria italica
Seita.9G035900 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 1964441-1969440 Setaria italica
Seita.9G035900 5.0kb downstream 5.0kb downstream 7752 true scaffold_9: 1969441-1977192 Setaria italica
Seita.9G035900 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 1972193-1977192 Setaria italica
Seita.9G035900 10.0kb upstream 10.0kb upstream 12752 true scaffold_9: 1959441-1972192 Setaria italica
Seita.9G035900 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 1959441-1969440 Setaria italica
Seita.9G035900 10.0kb downstream 10.0kb downstream 12752 true scaffold_9: 1969441-1982192 Setaria italica
Seita.9G035900 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 1972193-1982192 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194729 5267 Panicoideae View MSA
124584120 5269 Grass View MSA
122046151 5273 Angiosperm View MSA
121344196 5274 Embryophyte View MSA
123424660 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 47.662     High  
cufflinks 52.534     High  
cufflinks 17.3     High Low
cufflinks 17.081     High Low
cufflinks 25.283     High Low
cufflinks 57.19     High  
cufflinks 49.182     High  
cufflinks 77.156     High  
cufflinks 86.771     High High
cufflinks 104.9     High High
cufflinks 55.792     High  
cufflinks 65.748     High  
cufflinks 58.237     High  
cufflinks 28.997     High  
cufflinks 65.469     High  
cufflinks 27.812     High  
cufflinks 91.552     High High
cufflinks 33.581     High  
cufflinks 23.136     High Low
cufflinks 81.892     High High

0 Strain