Gene : Seita.9G036800 S. italica v2.2
Defline:  (1 of 1) PTHR33405:SF1 - PROTEIN FLC EXPRESSOR Genomic Order:  368
Name:  ? Seita.9G036800 Secondary Identifier:  ? PAC:32686874
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G036800 0.5kb upstream 0.5kb upstream 4450 true scaffold_9: 2020146-2024595 Setaria italica
Seita.9G036800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 2024096-2024595 Setaria italica
Seita.9G036800 0.5kb downstream 0.5kb downstream 4450 true scaffold_9: 2019646-2024095 Setaria italica
Seita.9G036800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 2019646-2020145 Setaria italica
Seita.9G036800 1.0kb upstream 1.0kb upstream 4950 true scaffold_9: 2020146-2025095 Setaria italica
Seita.9G036800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 2024096-2025095 Setaria italica
Seita.9G036800 1.0kb downstream 1.0kb downstream 4950 true scaffold_9: 2019146-2024095 Setaria italica
Seita.9G036800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 2019146-2020145 Setaria italica
Seita.9G036800 2.0kb upstream 2.0kb upstream 5950 true scaffold_9: 2020146-2026095 Setaria italica
Seita.9G036800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 2024096-2026095 Setaria italica
Seita.9G036800 2.0kb downstream 2.0kb downstream 5950 true scaffold_9: 2018146-2024095 Setaria italica
Seita.9G036800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 2018146-2020145 Setaria italica
Seita.9G036800 5.0kb upstream 5.0kb upstream 8950 true scaffold_9: 2020146-2029095 Setaria italica
Seita.9G036800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 2024096-2029095 Setaria italica
Seita.9G036800 5.0kb downstream 5.0kb downstream 8950 true scaffold_9: 2015146-2024095 Setaria italica
Seita.9G036800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 2015146-2020145 Setaria italica
Seita.9G036800 10.0kb upstream 10.0kb upstream 13950 true scaffold_9: 2020146-2034095 Setaria italica
Seita.9G036800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 2024096-2034095 Setaria italica
Seita.9G036800 10.0kb downstream 10.0kb downstream 13950 true scaffold_9: 2010146-2024095 Setaria italica
Seita.9G036800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 2010146-2020145 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026776 5273 Angiosperm View MSA
122197993 5267 Panicoideae View MSA
124573041 5269 Grass View MSA
121296551 5274 Embryophyte View MSA
123334697 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.177        
cufflinks 4.176        
cufflinks 4.379        
cufflinks 4.66        
cufflinks 4.085        
cufflinks 4.676        
cufflinks 3.649       Low
cufflinks 6.403       High
cufflinks 4.129        
cufflinks 5.206        
cufflinks 3.842       Low
cufflinks 5.14        
cufflinks 5.57       High
cufflinks 4.385        
cufflinks 4.303        
cufflinks 4.189        
cufflinks 5.92       High
cufflinks 5.451       High
cufflinks 5.017        
cufflinks 4.622        

0 Strain