Gene : Seita.9G041600 S. italica v2.2
Defline:  (1 of 1) PTHR10338:SF126 - MAGNESIUM-CHELATASE SUBUNIT CHLD, CHLOROPLASTIC Genomic Order:  416
Name:  ? Seita.9G041600 Secondary Identifier:  ? PAC:32690933
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica CHLOROPHYLL-SYN Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G041600 0.5kb upstream 0.5kb upstream 6736 true scaffold_9: 2325303-2332038 Setaria italica
Seita.9G041600 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 2331539-2332038 Setaria italica
Seita.9G041600 0.5kb downstream 0.5kb downstream 6736 true scaffold_9: 2324803-2331538 Setaria italica
Seita.9G041600 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 2324803-2325302 Setaria italica
Seita.9G041600 1.0kb upstream 1.0kb upstream 7236 true scaffold_9: 2325303-2332538 Setaria italica
Seita.9G041600 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 2331539-2332538 Setaria italica
Seita.9G041600 1.0kb downstream 1.0kb downstream 7236 true scaffold_9: 2324303-2331538 Setaria italica
Seita.9G041600 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 2324303-2325302 Setaria italica
Seita.9G041600 2.0kb upstream 2.0kb upstream 8236 true scaffold_9: 2325303-2333538 Setaria italica
Seita.9G041600 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 2331539-2333538 Setaria italica
Seita.9G041600 2.0kb downstream 2.0kb downstream 8236 true scaffold_9: 2323303-2331538 Setaria italica
Seita.9G041600 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 2323303-2325302 Setaria italica
Seita.9G041600 5.0kb upstream 5.0kb upstream 11236 true scaffold_9: 2325303-2336538 Setaria italica
Seita.9G041600 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 2331539-2336538 Setaria italica
Seita.9G041600 5.0kb downstream 5.0kb downstream 11236 true scaffold_9: 2320303-2331538 Setaria italica
Seita.9G041600 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 2320303-2325302 Setaria italica
Seita.9G041600 10.0kb upstream 10.0kb upstream 16236 true scaffold_9: 2325303-2341538 Setaria italica
Seita.9G041600 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 2331539-2341538 Setaria italica
Seita.9G041600 10.0kb downstream 10.0kb downstream 16236 true scaffold_9: 2315303-2331538 Setaria italica
Seita.9G041600 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 2315303-2325302 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026552 5273 Angiosperm View MSA
122190089 5267 Panicoideae View MSA
124573827 5269 Grass View MSA
121344824 5274 Embryophyte View MSA
123424530 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.71     High  
cufflinks 13.643     High  
cufflinks 26.377     High  
cufflinks 28.326     High  
cufflinks 54.51     High High
cufflinks 16.026     High  
cufflinks 52.579     High High
cufflinks 49.541     High  
cufflinks 84.801     High High
cufflinks 9.437        
cufflinks 13.58     High  
cufflinks 0.831       Low
cufflinks 2.151       Low
cufflinks 15.422     High  
cufflinks 0.936       Low
cufflinks 45.726     High  
cufflinks 1.196       Low
cufflinks 11.065        
cufflinks 22.213     High  
cufflinks 0.985       Low

0 Strain