Gene : Seita.9G041500 S. italica v2.2
Defline:  (1 of 21) PF00533 - BRCA1 C Terminus (BRCT) domain Genomic Order:  415
Name:  ? Seita.9G041500 Secondary Identifier:  ? PAC:32692658
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G041500 0.5kb upstream 0.5kb upstream 10806 true scaffold_9: 2313141-2323946 Setaria italica
Seita.9G041500 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 2323447-2323946 Setaria italica
Seita.9G041500 0.5kb downstream 0.5kb downstream 10806 true scaffold_9: 2312641-2323446 Setaria italica
Seita.9G041500 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 2312641-2313140 Setaria italica
Seita.9G041500 1.0kb upstream 1.0kb upstream 11306 true scaffold_9: 2313141-2324446 Setaria italica
Seita.9G041500 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 2323447-2324446 Setaria italica
Seita.9G041500 1.0kb downstream 1.0kb downstream 11306 true scaffold_9: 2312141-2323446 Setaria italica
Seita.9G041500 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 2312141-2313140 Setaria italica
Seita.9G041500 2.0kb upstream 2.0kb upstream 12306 true scaffold_9: 2313141-2325446 Setaria italica
Seita.9G041500 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 2323447-2325446 Setaria italica
Seita.9G041500 2.0kb downstream 2.0kb downstream 12306 true scaffold_9: 2311141-2323446 Setaria italica
Seita.9G041500 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 2311141-2313140 Setaria italica
Seita.9G041500 5.0kb upstream 5.0kb upstream 15306 true scaffold_9: 2313141-2328446 Setaria italica
Seita.9G041500 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 2323447-2328446 Setaria italica
Seita.9G041500 5.0kb downstream 5.0kb downstream 15306 true scaffold_9: 2308141-2323446 Setaria italica
Seita.9G041500 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 2308141-2313140 Setaria italica
Seita.9G041500 10.0kb upstream 10.0kb upstream 20306 true scaffold_9: 2313141-2333446 Setaria italica
Seita.9G041500 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 2323447-2333446 Setaria italica
Seita.9G041500 10.0kb downstream 10.0kb downstream 20306 true scaffold_9: 2303141-2323446 Setaria italica
Seita.9G041500 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 2303141-2313140 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195856 5267 Panicoideae View MSA
124587970 5269 Grass View MSA
122048777 5273 Angiosperm View MSA
121349208 5274 Embryophyte View MSA
123381216 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.4        
cufflinks 0.448       High
cufflinks 0.09       Low
cufflinks 0.051     Low Low
cufflinks 0.159        
cufflinks 0.357        
cufflinks 0.361        
cufflinks 0.34        
cufflinks 0.501       High
cufflinks 0.227     Low  
cufflinks 0.445        
cufflinks 0.236        
cufflinks 0.227        
cufflinks 0.138        
cufflinks 0.325        
cufflinks 0.287        
cufflinks 0.344        
cufflinks 0.277        
cufflinks 0.078     Low Low
cufflinks 0.266        

0 Strain