Gene : Seita.9G044600 S. italica v2.2
Defline:  (1 of 138) PF07762 - Protein of unknown function (DUF1618) Genomic Order:  446
Name:  ? Seita.9G044600 Secondary Identifier:  ? PAC:32691498
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G044600 0.5kb upstream 0.5kb upstream 1854 true scaffold_9: 2503414-2505267 Setaria italica
Seita.9G044600 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 2504768-2505267 Setaria italica
Seita.9G044600 0.5kb downstream 0.5kb downstream 1854 true scaffold_9: 2502914-2504767 Setaria italica
Seita.9G044600 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 2502914-2503413 Setaria italica
Seita.9G044600 1.0kb upstream 1.0kb upstream 2354 true scaffold_9: 2503414-2505767 Setaria italica
Seita.9G044600 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 2504768-2505767 Setaria italica
Seita.9G044600 1.0kb downstream 1.0kb downstream 2354 true scaffold_9: 2502414-2504767 Setaria italica
Seita.9G044600 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 2502414-2503413 Setaria italica
Seita.9G044600 2.0kb upstream 2.0kb upstream 3354 true scaffold_9: 2503414-2506767 Setaria italica
Seita.9G044600 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 2504768-2506767 Setaria italica
Seita.9G044600 2.0kb downstream 2.0kb downstream 3354 true scaffold_9: 2501414-2504767 Setaria italica
Seita.9G044600 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 2501414-2503413 Setaria italica
Seita.9G044600 5.0kb upstream 5.0kb upstream 6354 true scaffold_9: 2503414-2509767 Setaria italica
Seita.9G044600 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 2504768-2509767 Setaria italica
Seita.9G044600 5.0kb downstream 5.0kb downstream 6354 true scaffold_9: 2498414-2504767 Setaria italica
Seita.9G044600 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 2498414-2503413 Setaria italica
Seita.9G044600 10.0kb upstream 10.0kb upstream 11354 true scaffold_9: 2503414-2514767 Setaria italica
Seita.9G044600 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 2504768-2514767 Setaria italica
Seita.9G044600 10.0kb downstream 10.0kb downstream 11354 true scaffold_9: 2493414-2504767 Setaria italica
Seita.9G044600 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 2493414-2503413 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121994770 5273 Angiosperm View MSA
122193733 5267 Panicoideae View MSA
124585583 5269 Grass View MSA
121264986 5274 Embryophyte View MSA
123303402 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.013     Low Low
cufflinks 0.229        
cufflinks 0.196        
cufflinks 0.345        
cufflinks 0.157        
cufflinks 0.144        
cufflinks 0.096     Low  
cufflinks 0.052     Low  
cufflinks 0.392        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.023     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.764       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.261        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.817       High
cufflinks 0.964       High
cufflinks 0.0     Not Expressed Not Expressed

0 Strain