Gene : Seita.9G044700 S. italica v2.2
Defline:  (1 of 2) PTHR13718//PTHR13718:SF69 - RIBOSOMAL S SUBUNIT Genomic Order:  447
Name:  ? Seita.9G044700 Secondary Identifier:  ? PAC:32690691
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G044700 0.5kb upstream 0.5kb upstream 2562 true scaffold_9: 2529693-2532254 Setaria italica
Seita.9G044700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 2531755-2532254 Setaria italica
Seita.9G044700 0.5kb downstream 0.5kb downstream 2562 true scaffold_9: 2529193-2531754 Setaria italica
Seita.9G044700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 2529193-2529692 Setaria italica
Seita.9G044700 1.0kb upstream 1.0kb upstream 3062 true scaffold_9: 2529693-2532754 Setaria italica
Seita.9G044700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 2531755-2532754 Setaria italica
Seita.9G044700 1.0kb downstream 1.0kb downstream 3062 true scaffold_9: 2528693-2531754 Setaria italica
Seita.9G044700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 2528693-2529692 Setaria italica
Seita.9G044700 2.0kb upstream 2.0kb upstream 4062 true scaffold_9: 2529693-2533754 Setaria italica
Seita.9G044700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 2531755-2533754 Setaria italica
Seita.9G044700 2.0kb downstream 2.0kb downstream 4062 true scaffold_9: 2527693-2531754 Setaria italica
Seita.9G044700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 2527693-2529692 Setaria italica
Seita.9G044700 5.0kb upstream 5.0kb upstream 7062 true scaffold_9: 2529693-2536754 Setaria italica
Seita.9G044700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 2531755-2536754 Setaria italica
Seita.9G044700 5.0kb downstream 5.0kb downstream 7062 true scaffold_9: 2524693-2531754 Setaria italica
Seita.9G044700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 2524693-2529692 Setaria italica
Seita.9G044700 10.0kb upstream 10.0kb upstream 12062 true scaffold_9: 2529693-2541754 Setaria italica
Seita.9G044700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 2531755-2541754 Setaria italica
Seita.9G044700 10.0kb downstream 10.0kb downstream 12062 true scaffold_9: 2519693-2531754 Setaria italica
Seita.9G044700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 2519693-2529692 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189980 5267 Panicoideae View MSA
124583064 5269 Grass View MSA
122047189 5273 Angiosperm View MSA
121344542 5274 Embryophyte View MSA
123424194 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 32.795     High  
cufflinks 47.639     High  
cufflinks 10.784     High Low
cufflinks 6.965       Low
cufflinks 12.888     High Low
cufflinks 53.165     High  
cufflinks 29.864     High  
cufflinks 86.821     High High
cufflinks 65.319     High  
cufflinks 124.433     High High
cufflinks 44.385     High  
cufflinks 38.372     High  
cufflinks 23.838     High  
cufflinks 26.947     High  
cufflinks 41.359     High  
cufflinks 12.12     High Low
cufflinks 57.265     High  
cufflinks 7.315       Low
cufflinks 18.77     High  
cufflinks 58.876     High  

0 Strain