Gene : Seita.9G045200 S. italica v2.2
Defline:  (1 of 1) PTHR12419:SF10 - PROTEIN OTUB-3, ISOFORM B Genomic Order:  452
Name:  ? Seita.9G045200 Secondary Identifier:  ? PAC:32692056
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G045200 0.5kb upstream 0.5kb upstream 3807 true scaffold_9: 2558504-2562310 Setaria italica
Seita.9G045200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 2558504-2559003 Setaria italica
Seita.9G045200 0.5kb downstream 0.5kb downstream 3807 true scaffold_9: 2559004-2562810 Setaria italica
Seita.9G045200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 2562311-2562810 Setaria italica
Seita.9G045200 1.0kb upstream 1.0kb upstream 4307 true scaffold_9: 2558004-2562310 Setaria italica
Seita.9G045200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 2558004-2559003 Setaria italica
Seita.9G045200 1.0kb downstream 1.0kb downstream 4307 true scaffold_9: 2559004-2563310 Setaria italica
Seita.9G045200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 2562311-2563310 Setaria italica
Seita.9G045200 2.0kb upstream 2.0kb upstream 5307 true scaffold_9: 2557004-2562310 Setaria italica
Seita.9G045200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 2557004-2559003 Setaria italica
Seita.9G045200 2.0kb downstream 2.0kb downstream 5307 true scaffold_9: 2559004-2564310 Setaria italica
Seita.9G045200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 2562311-2564310 Setaria italica
Seita.9G045200 5.0kb upstream 5.0kb upstream 8307 true scaffold_9: 2554004-2562310 Setaria italica
Seita.9G045200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 2554004-2559003 Setaria italica
Seita.9G045200 5.0kb downstream 5.0kb downstream 8307 true scaffold_9: 2559004-2567310 Setaria italica
Seita.9G045200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 2562311-2567310 Setaria italica
Seita.9G045200 10.0kb upstream 10.0kb upstream 13307 true scaffold_9: 2549004-2562310 Setaria italica
Seita.9G045200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 2549004-2559003 Setaria italica
Seita.9G045200 10.0kb downstream 10.0kb downstream 13307 true scaffold_9: 2559004-2572310 Setaria italica
Seita.9G045200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 2562311-2572310 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187489 5267 Panicoideae View MSA
124570226 5269 Grass View MSA
122043014 5273 Angiosperm View MSA
121346407 5274 Embryophyte View MSA
123428461 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.862        
cufflinks 7.48        
cufflinks 4.921       Low
cufflinks 4.742       Low
cufflinks 6.597        
cufflinks 8.958        
cufflinks 5.889        
cufflinks 7.902        
cufflinks 11.786       High
cufflinks 7.614        
cufflinks 8.557        
cufflinks 7.433        
cufflinks 9.267        
cufflinks 5.743        
cufflinks 9.511       High
cufflinks 5.736        
cufflinks 9.54       High
cufflinks 6.364        
cufflinks 5.536       Low
cufflinks 9.249        

0 Strain