Gene : Seita.9G047300 S. italica v2.2
Defline:  (1 of 1) KOG2822 - Sphingoid base-phosphate phosphatase Genomic Order:  473
Name:  ? Seita.9G047300 Secondary Identifier:  ? PAC:32692646
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica TRIGLSYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G047300 0.5kb upstream 0.5kb upstream 3719 true scaffold_9: 2712356-2716074 Setaria italica
Seita.9G047300 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 2712356-2712855 Setaria italica
Seita.9G047300 0.5kb downstream 0.5kb downstream 3719 true scaffold_9: 2712856-2716574 Setaria italica
Seita.9G047300 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 2716075-2716574 Setaria italica
Seita.9G047300 1.0kb upstream 1.0kb upstream 4219 true scaffold_9: 2711856-2716074 Setaria italica
Seita.9G047300 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 2711856-2712855 Setaria italica
Seita.9G047300 1.0kb downstream 1.0kb downstream 4219 true scaffold_9: 2712856-2717074 Setaria italica
Seita.9G047300 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 2716075-2717074 Setaria italica
Seita.9G047300 2.0kb upstream 2.0kb upstream 5219 true scaffold_9: 2710856-2716074 Setaria italica
Seita.9G047300 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 2710856-2712855 Setaria italica
Seita.9G047300 2.0kb downstream 2.0kb downstream 5219 true scaffold_9: 2712856-2718074 Setaria italica
Seita.9G047300 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 2716075-2718074 Setaria italica
Seita.9G047300 5.0kb upstream 5.0kb upstream 8219 true scaffold_9: 2707856-2716074 Setaria italica
Seita.9G047300 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 2707856-2712855 Setaria italica
Seita.9G047300 5.0kb downstream 5.0kb downstream 8219 true scaffold_9: 2712856-2721074 Setaria italica
Seita.9G047300 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 2716075-2721074 Setaria italica
Seita.9G047300 10.0kb upstream 10.0kb upstream 13219 true scaffold_9: 2702856-2716074 Setaria italica
Seita.9G047300 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 2702856-2712855 Setaria italica
Seita.9G047300 10.0kb downstream 10.0kb downstream 13219 true scaffold_9: 2712856-2726074 Setaria italica
Seita.9G047300 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 2716075-2726074 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197916 5267 Panicoideae View MSA
124580296 5269 Grass View MSA
122041787 5273 Angiosperm View MSA
121351488 5274 Embryophyte View MSA
123382186 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.618     High High
cufflinks 16.587     High  
cufflinks 8.363       Low
cufflinks 9.574       Low
cufflinks 12.763     High  
cufflinks 16.314     High  
cufflinks 21.958     High High
cufflinks 14.318     High  
cufflinks 14.254     High  
cufflinks 18.813     High  
cufflinks 22.224     High High
cufflinks 15.214     High  
cufflinks 17.1     High  
cufflinks 12.932        
cufflinks 18.448     High  
cufflinks 17.814     High  
cufflinks 12.882        
cufflinks 22.58     High High
cufflinks 10.499       Low
cufflinks 14.095        

0 Strain