Gene : Seita.9G046800 S. italica v2.2
Defline:  (1 of 6) 1.14.12.20 - Pheophorbide a oxygenase / Pheide a oxygenase Genomic Order:  468
Name:  ? Seita.9G046800 Secondary Identifier:  ? PAC:32691081
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5098 Setaria italica pathologic  
Sitalica PWY-6927 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G046800 0.5kb upstream 0.5kb upstream 1596 true scaffold_9: 2692265-2693860 Setaria italica
Seita.9G046800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 2693361-2693860 Setaria italica
Seita.9G046800 0.5kb downstream 0.5kb downstream 1596 true scaffold_9: 2691765-2693360 Setaria italica
Seita.9G046800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 2691765-2692264 Setaria italica
Seita.9G046800 1.0kb upstream 1.0kb upstream 2096 true scaffold_9: 2692265-2694360 Setaria italica
Seita.9G046800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 2693361-2694360 Setaria italica
Seita.9G046800 1.0kb downstream 1.0kb downstream 2096 true scaffold_9: 2691265-2693360 Setaria italica
Seita.9G046800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 2691265-2692264 Setaria italica
Seita.9G046800 2.0kb upstream 2.0kb upstream 3096 true scaffold_9: 2692265-2695360 Setaria italica
Seita.9G046800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 2693361-2695360 Setaria italica
Seita.9G046800 2.0kb downstream 2.0kb downstream 3096 true scaffold_9: 2690265-2693360 Setaria italica
Seita.9G046800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 2690265-2692264 Setaria italica
Seita.9G046800 5.0kb upstream 5.0kb upstream 6096 true scaffold_9: 2692265-2698360 Setaria italica
Seita.9G046800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 2693361-2698360 Setaria italica
Seita.9G046800 5.0kb downstream 5.0kb downstream 6096 true scaffold_9: 2687265-2693360 Setaria italica
Seita.9G046800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 2687265-2692264 Setaria italica
Seita.9G046800 10.0kb upstream 10.0kb upstream 11096 true scaffold_9: 2692265-2703360 Setaria italica
Seita.9G046800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 2693361-2703360 Setaria italica
Seita.9G046800 10.0kb downstream 10.0kb downstream 11096 true scaffold_9: 2682265-2693360 Setaria italica
Seita.9G046800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 2682265-2692264 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027752 5273 Angiosperm View MSA
122197326 5267 Panicoideae View MSA
124575278 5269 Grass View MSA
123429167 5275 Viridiplantae View MSA
121348668 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.379        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.281        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.026     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain