Gene : Seita.9G133700 S. italica v2.2
Defline:  (1 of 1) PTHR16263:SF4 - TETRATRICOPEPTIDE REPEAT PROTEIN 38 Genomic Order:  1337
Name:  ? Seita.9G133700 Secondary Identifier:  ? PAC:32687969
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G133700 0.5kb upstream 0.5kb upstream 5709 true scaffold_9: 8422948-8428656 Setaria italica
Seita.9G133700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 8422948-8423447 Setaria italica
Seita.9G133700 0.5kb downstream 0.5kb downstream 5709 true scaffold_9: 8423448-8429156 Setaria italica
Seita.9G133700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 8428657-8429156 Setaria italica
Seita.9G133700 1.0kb upstream 1.0kb upstream 6209 true scaffold_9: 8422448-8428656 Setaria italica
Seita.9G133700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 8422448-8423447 Setaria italica
Seita.9G133700 1.0kb downstream 1.0kb downstream 6209 true scaffold_9: 8423448-8429656 Setaria italica
Seita.9G133700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 8428657-8429656 Setaria italica
Seita.9G133700 2.0kb upstream 2.0kb upstream 7209 true scaffold_9: 8421448-8428656 Setaria italica
Seita.9G133700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 8421448-8423447 Setaria italica
Seita.9G133700 2.0kb downstream 2.0kb downstream 7209 true scaffold_9: 8423448-8430656 Setaria italica
Seita.9G133700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 8428657-8430656 Setaria italica
Seita.9G133700 5.0kb upstream 5.0kb upstream 10209 true scaffold_9: 8418448-8428656 Setaria italica
Seita.9G133700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 8418448-8423447 Setaria italica
Seita.9G133700 5.0kb downstream 5.0kb downstream 10209 true scaffold_9: 8423448-8433656 Setaria italica
Seita.9G133700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 8428657-8433656 Setaria italica
Seita.9G133700 10.0kb upstream 10.0kb upstream 15209 true scaffold_9: 8413448-8428656 Setaria italica
Seita.9G133700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 8413448-8423447 Setaria italica
Seita.9G133700 10.0kb downstream 10.0kb downstream 15209 true scaffold_9: 8423448-8438656 Setaria italica
Seita.9G133700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 8428657-8438656 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179207 5267 Panicoideae View MSA
124589138 5269 Grass View MSA
122043704 5273 Angiosperm View MSA
121346225 5274 Embryophyte View MSA
123380350 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.327        
cufflinks 5.778        
cufflinks 2.76       Low
cufflinks 4.292        
cufflinks 6.295        
cufflinks 5.159        
cufflinks 2.788        
cufflinks 6.765        
cufflinks 7.935        
cufflinks 5.019        
cufflinks 5.306        
cufflinks 11.526       High
cufflinks 12.448       High
cufflinks 1.402       Low
cufflinks 5.643        
cufflinks 2.96        
cufflinks 9.843       High
cufflinks 13.707     High High
cufflinks 1.611       Low
cufflinks 8.107        

0 Strain