Gene : Seita.9G136900 S. italica v2.2
Defline:  (1 of 1) PTHR15502 - CALCINEURIN-BINDING PROTEIN CABIN 1-RELATED Genomic Order:  1369
Name:  ? Seita.9G136900 Secondary Identifier:  ? PAC:32690220
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G136900 0.5kb upstream 0.5kb upstream 12785 true scaffold_9: 8670738-8683522 Setaria italica
Seita.9G136900 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 8683023-8683522 Setaria italica
Seita.9G136900 0.5kb downstream 0.5kb downstream 12785 true scaffold_9: 8670238-8683022 Setaria italica
Seita.9G136900 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 8670238-8670737 Setaria italica
Seita.9G136900 1.0kb upstream 1.0kb upstream 13285 true scaffold_9: 8670738-8684022 Setaria italica
Seita.9G136900 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 8683023-8684022 Setaria italica
Seita.9G136900 1.0kb downstream 1.0kb downstream 13285 true scaffold_9: 8669738-8683022 Setaria italica
Seita.9G136900 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 8669738-8670737 Setaria italica
Seita.9G136900 2.0kb upstream 2.0kb upstream 14285 true scaffold_9: 8670738-8685022 Setaria italica
Seita.9G136900 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 8683023-8685022 Setaria italica
Seita.9G136900 2.0kb downstream 2.0kb downstream 14285 true scaffold_9: 8668738-8683022 Setaria italica
Seita.9G136900 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 8668738-8670737 Setaria italica
Seita.9G136900 5.0kb upstream 5.0kb upstream 17285 true scaffold_9: 8670738-8688022 Setaria italica
Seita.9G136900 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 8683023-8688022 Setaria italica
Seita.9G136900 5.0kb downstream 5.0kb downstream 17285 true scaffold_9: 8665738-8683022 Setaria italica
Seita.9G136900 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 8665738-8670737 Setaria italica
Seita.9G136900 10.0kb upstream 10.0kb upstream 22285 true scaffold_9: 8670738-8693022 Setaria italica
Seita.9G136900 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 8683023-8693022 Setaria italica
Seita.9G136900 10.0kb downstream 10.0kb downstream 22285 true scaffold_9: 8660738-8683022 Setaria italica
Seita.9G136900 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 8660738-8670737 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178465 5267 Panicoideae View MSA
124580907 5269 Grass View MSA
122042501 5273 Angiosperm View MSA
121348096 5274 Embryophyte View MSA
123424032 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.174       High
cufflinks 5.612        
cufflinks 6.266        
cufflinks 5.8        
cufflinks 4.314        
cufflinks 5.174        
cufflinks 5.027        
cufflinks 3.089       Low
cufflinks 3.618        
cufflinks 1.763       Low
cufflinks 4.698        
cufflinks 4.129        
cufflinks 3.993        
cufflinks 4.097        
cufflinks 4.332        
cufflinks 8.245       High
cufflinks 3.2        
cufflinks 10.566       High
cufflinks 4.014        
cufflinks 3.754        

0 Strain